Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1143 ATGGACTCTCACCAGCTTTTCGGATTTGGCATAAGGGATGCAGGTGTCTCCTACTCATCTTCTGTTCCATCGCTACCTAATAATTTACTTGGACCTTTGAAATTCAACTTAAGAAATTCCCCTACTTCACTTTTTTCGTCTCAATTTGATTCGGATACCCAAACGACTCTGAGTGACAGTCCGGATCAACACAACTCGCCTGAGAATCTCTTGAGACTTAGTCCTTCTTGTAATTCTTCATTTGAGACAAGCAGCTTTCATCAAAGAAGTTCCTATTTCGATCATTCTGAGGACTGCCAACATATCGATTCGGGGACAAGCAGCTTTTTATATGATGGAGGTTCAACGGAGAACTTGAGATATGCTTTGCAACAATTGGAGAGTGCTCTGATGGGGCCAGATGAGGAGGAAGTGATTAGCAAGCCAGATACTTCTTTTGGAGAAAGTAGTAGGCCAGAGATGATGGGGCAGCAATCCTGCTATAGGAGCCAAGGTCATCGTGGGTCACATGTTATCCAGTCTCAAACATCGTCTCCCGTATCAAGCCGCCAGCAGGGTGAAGTTGTTCGCTTGGAGAAACGCCAGAAATCAATGGAGGAAGCATTGTTGCAGGGATTCCCATCGGATAACTTGAAGCAATTGCTGATTGCCTGTGCTAAAGCTTTAGCTGAAAACAAGATGGAGGATTTTAATGATTTGGTTGCAAAGGCAAGAGGTGCTGTGTCTATCAGTGGAGAACCCATCCAGCGGCTTGGTGCTTACATGGTAGAAGGGCTGGTAGCAAGGAAAGAGGAATCTGGAACGAGTATATACCGTGCGCTACACTGTAGAGAGCCTGCAAGTGATGATTTGCTATCGTACATGCATATACTGTATGAAATCTGCCCTTACTTGAAGTTCGGATACATGGCAGCGAACGGGGCAATTGCCGAAGCCTGCAGAAATGAGGATCGCATCCACATCATAGATTTCCAGATTACTCAGGGGACTCAGTGGTTAACTCTTCTTCAAGCACTTGCAGCAAGACCTGGTGGGGCGCCCCATGTGAGGATTACAGGTATTGACGATCCTATTTCTAAATATGCCCGTGGGGATGGGTTGCAAGCAGTGGGAAGACGGTTGGCAGATATCTCAAAGAGGTACAACATACCAGTAGAGTTTCATGGAGTGCCAGTTTTCGCTCCAGATATCACTCCTGATATGCTTGATATCAGGCCCGGGGAAGCTCTGGCTGTAAACTTCCCTTTGCAGCTTCATCATACCCCCGATGAAAGCGTCAGCGTGAATAATCCACGGGATGGCTTGCTGAGAATGGTGAAGTCATTATCCCCTAAGGTAGTCACTCTGGTAGAGCAAGAATCAAACACGAATACAGCCCCTTTCTTCAACAGGTTTGTGGAGACTTTGAATTACTACCTGGCAATCTTTGAGTCCATTGATGTCACCCTACCGAGGAATAACAAGAAGCGCATTAACGTGGAACAACACTGTTTGGCAAAAGACATTGTTAATGTCATTGCTTGTGAGGGGATAGAACGAGAAGAGCGACACGAGCTCTTCGGCAAGTGGAAATCAAGGTTGACAATGGCAGGGTTCCGCCAATTCCCATTGAGCTCTTATGTTAACTCCGTTATCGGAGGCCTACTGAGATGTTATTCCGAGCATTACACATTGGTGGAGAAGGATGGAGCTATGCTGTTGGGGTGGAAAAGTAGGAACCTGATATCTGCCTCAGCCTGGTGTTGA 1746 46.28 MDSHQLFGFGIRDAGVSYSSSVPSLPNNLLGPLKFNLRNSPTSLFSSQFDSDTQTTLSDSPDQHNSPENLLRLSPSCNSSFETSSFHQRSSYFDHSEDCQHIDSGTSSFLYDGGSTENLRYALQQLESALMGPDEEEVISKPDTSFGESSRPEMMGQQSCYRSQGHRGSHVIQSQTSSPVSSRQQGEVVRLEKRQKSMEEALLQGFPSDNLKQLLIACAKALAENKMEDFNDLVAKARGAVSISGEPIQRLGAYMVEGLVARKEESGTSIYRALHCREPASDDLLSYMHILYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPGGAPHVRITGIDDPISKYARGDGLQAVGRRLADISKRYNIPVEFHGVPVFAPDITPDMLDIRPGEALAVNFPLQLHHTPDESVSVNNPRDGLLRMVKSLSPKVVTLVEQESNTNTAPFFNRFVETLNYYLAIFESIDVTLPRNNKKRINVEQHCLAKDIVNVIACEGIEREERHELFGKWKSRLTMAGFRQFPLSSYVNSVIGGLLRCYSEHYTLVEKDGAMLLGWKSRNLISASAWC 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9150900 9152645 - evm.model.ptg000002l.516 HCH12g1143 555990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1143 581 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 182 580 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH12g1143 581 MobiDBLite consensus disorder prediction 143 185 - -
HCH12g1143 581 MobiDBLite consensus disorder prediction 46 68 - -
HCH12g1143 581 ProSiteProfiles GRAS family profile. 202 581 IPR005202 -
HCH12g1143 581 Pfam GRAS domain family 211 580 IPR005202 -
HCH12g1143 581 MobiDBLite consensus disorder prediction 132 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1143 HCH-Chr12:9150900 HCH6g0857 HCH-Chr6:43379011 2.20E-138 dispersed
HCH12g1143 HCH-Chr12:9150900 HCH2g0668 HCH-Chr2:50476335 1.40E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32727 PF03514 GRAS 4.10E-129 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1143 K27748 - csv:101216606 885.174