Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1145 ATGCCAACAGTTTGGTTTTCTTTGAAGAAGTCTTTCCCTTGCAAACCAGAGACATCAGACGTCTATGACCCAAAATCCAGGAAAAAACTAAACACAATCACAACCAAAAAGGCAGGAAAGTCAGGATGTTCATCAGGAAGATCTGGATGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGTAAGAGACATTTCGAAAAGCCACCAATTTGCAGTCCAAGATCAATTGGTAGCAGTGAGTTCCTCAACCCTCTTGCCCATGAAGTGATATTCAGTAACTCAAAGTATGAGCTGAAAATCACTGGTTTTGGAGGCTTCCATGAGGGTGTTGGAAGTGGCGGCTTTGGTGGCGGAAATTCGGCCTTTGTGGGTACTCTTAGGCCTGGAACTCCAGGTCCTGGGGAGCAGTATACAAACAAATCCAATTCCTCTTTTAGTTTCTCCACAACTTCTGCTAGAAAGCTTCCTTCTCTTTTGTCATATAGAGAAGGGTCTGGATTTGAGGGTCCTGCCAAATCTAGGGGTGATGAAGTTTATACAAGCAAAAGGTTCTCCCCTCTAACAGAATCTCATGGTAATACCTTTTCTGCAGTTACTTGCCATAAATGTGCAGAGCAGTTTAGCAAATTGGAGGCTGCTGAGTCTCACCATTTGTCCAAGCATGCTGTTACTGAGCTTGTGGAAGGCGACTCGTCAAGGAAGATCGTCGAAATAATATGCCGTACGAACTGGTCGAAAACTGAGAACAATTACAGCCGAATCGAAAGAGTTTTCAAAGTTCACAACATGCAGAAAACGTTAGCTGCATTTGAAGAATACAGGGAAACGGTGAAAATCAAAGCAAGCAAGCTTCCCAAGAAACACCCCAGATGCCTTGCTGATGGAAATGAGCTACTGAGGTTTTATGGAACAACTCTAGCCTGCTCTCTTGGACTAAATGGCTCCTCCAGCCTCTGCATATCTCAAAAATGCTGTGTTTGTAGAATCATTAAAAATGGTTTCTCAGCAAACAAGGATATGAAAGAAGAGATAGGAGTTTTCACTACTTCCACCAGTGGAAAAGCTTTTGAAACCATTGAAATGGAGAAAGAAGATTCAGTAAAAAAAGTTCTGATTATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCTTTGGAGAACATACAGGAAATGGTTGGCCTATCAGGGTTTGATTCATTGGCTGGCAAAGTGGGGTTACACTCCAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTTTGCTTCCTTGCTTCATTGTAATCTGCAAACCATGA 1305 42.68 MPTVWFSLKKSFPCKPETSDVYDPKSRKKLNTITTKKAGKSGCSSGRSGCSRSIANLKDVIHGSKRHFEKPPICSPRSIGSSEFLNPLAHEVIFSNSKYELKITGFGGFHEGVGSGGFGGGNSAFVGTLRPGTPGPGEQYTNKSNSSFSFSTTSARKLPSLLSYREGSGFEGPAKSRGDEVYTSKRFSPLTESHGNTFSAVTCHKCAEQFSKLEAAESHHLSKHAVTELVEGDSSRKIVEIICRTNWSKTENNYSRIERVFKVHNMQKTLAAFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTLACSLGLNGSSSLCISQKCCVCRIIKNGFSANKDMKEEIGVFTTSTSGKAFETIEMEKEDSVKKVLIICRVIAGRVHRPLENIQEMVGLSGFDSLAGKVGLHSNIEELYLLNPRALLPCFIVICKP 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9199521 9201174 - evm.model.ptg000002l.514 HCH12g1145 555992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1145 434 Gene3D - 216 433 - -
HCH12g1145 434 FunFam C2H2-like zinc finger protein 225 433 - -
HCH12g1145 434 ProSitePatterns Zinc finger C2H2 type domain signature. 203 224 IPR013087 -
HCH12g1145 434 SUPERFAMILY ADP-ribosylation 226 433 - -
HCH12g1145 434 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1145 HCH-Chr12:9199521 HCH6g0724 HCH-Chr6:40770916 1.40E-169 dispersed
HCH2g1035 HCH-Chr2:53499780 HCH12g1145 HCH-Chr12:9199521 5.80E-47 transposed
HCH12g1145 HCH-Chr12:9199521 HCH14g0851 HCH-Chr14:36342639 1.10E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1145 - - - 0.0