Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1149 ATGGGTGTTGTGAAAAGGAGCTGTTTCTGTTTTGTTGTTTTGGTGATTCTTATATATGCTTCTGTAGCAACTAGTTTAAAGGATCAGGAGATAGAGGAAGTATTTCTGATTCAACTAGCTGATCCTGTTACTGGAGATGTTAACACAGAAATGGCTGAGCTGTTATGGATCAAGTGCAACTTGGATTTGATTCAGTTGAAGGAAGCTGTAGACAGTTTTGACTTATGCTCTAAAGAAAGCCTTAGGAGCTCAAATGGAATTAATTCTGAGTGTCAGATGCTGTCAAAAGAAAAAATGAAGAGGATGTTAAGTGTCATGCATCCCCAGGTGAAGCAGTCTCTTTTAGACTGCTTAAGACGGAATTTCCATGTCTCTGGAGAAGATTATGATTCCAAAGTTTGGTACACCAAGTACCTGGAGTCGTTTTTTATGCCTGGAAATTTTAGAAGGAAGTTAAGTTCTAGATGGCTTCAAAGCACGTCACAAGTGCCTGCTCCGGCACCCACTCCTACAGCTGAGACACCATTTTCAGGCCCCGCAATCTCCCTTGCCCCGGCACCTTCTAGCCCTGAAGATCCTCCATCTCCACCCCCTGCTGTACCTCCAAGAACACCATTTTTCCCACCAGATTCTGTGAACTCGGGTTTACAACCTTCAGTAGATGAAAATTCTTCGAATAAAGCTTCTGGTACAAATGGTCGGACAGAAAAGAAAAATGATAACCATATACCAGTTATCATTGCTGTTGTCGTAACGGCCTCTGTGACTTTTGTTATTGTAGCTCTGATCTTTTTGTGCTATTATAAGAGATCCAAATTTAGACGAACAGATGAAAATCATGAAAGGCCTCTCCTTAGCTTGAGCTTAAGTGAGCACTCTGTTGGTTCTTCACCCAAGTTTTCGGCTTTTGGGAATTCTATTAAGGAAGACAAGCTCACAAATCAAATGTCAAACTTAGGTCCCCACAAGTCAACTCCATCTTTGGATGGTAATTTACACATTGCCTCTGATGGTAGGCATAATTCAGTGCACGGAGCTACTGGAATTCCCAATGAAACTGGATCATCATATATGCCTGGCAGTACTAATGGATCAGTGTCTTTCACCTCAAATACTCTGCCTCCCCTGAAGCCTCCTCCTGGCAGGGCGAATCCCCTCCCTCCGGAACCCCCTTCATCTTTTAAGCCTCCATCCAGCAAGACCAATCCTCCTCTGCCTCCACCCCCTGCACCACCACCTGCACCACCACCCCCTTCAAGGCCTCCAGGAAATTCAGGTCGTCCTGGACCACCTCCACCTCCACCACCTGCTATCAACAAGGCAGGCCCTCGCCCACCTCCACCCCCGAAAAGTGGTGTCCCTCCCCCTCGTCCACCTCCATTAGCACCCAAAGGTGCAACTCCACCTCGTCCTCCTCCTAAACATTTACCAACTTCTGCTCCAGGTGAGGGAGGGAGTATGGAGGATACTGCTGATGCTCCCAAAACGAAATTGAAACCATTTTTCTGGGACAAAGTTCTAGCCAACCCTGATCATTCTATGGTTTGGCATCAAATAAAATCAGGATCTTTCCAATTCAATGAGGAGATGATAGAAACACTTTTTGGATATGCACCGGTTGATAGAAACAAAAATGATGGCAAGAAAGAATCATCATCGCAAGATCCTTCACACCAGTATATTCAGATCATTGATTCTAAGAAAGCGCAAAATCTATCCATTCTTTTGCGAGCATTAAATGTGACAAAAGAAGAAGTTTGTGATGCAATTCAAGAAGGGAATGAACTCCCTCCTGAACTTATTGAGAACCTATTGAAGATGGCACCTACAGCAGATGAAGAACTGAAGCTCCGACTATTTAATGGGGAACTTTCTCAACTCGGACCTGCTGAGCGGTTTCTTAAATCTTTGGTTGATATGCCATTTGCTTTTAAAAGGTTGGAATCATTGCTTTTCATGTGCACTCTTCAGGAGGATATCACCGTCACTAAAGAGTCCTTTGTTAACTTGGAGGTTGCTTGTAAGGAACTCAGAAGTAGCAGGCTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGCAATCGCATGAATGATGGAACTTTTCGAGGTGGTGCACAAGCATTCAAACTTGACACTCTTTTGAAATTGGCAGATGTAAAAGGAAAAGATGGCAAGACTACCCTCTTGCAGTTTGTAGTCCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGCACGAACGGGTACAGGAAGCCATAGCTTCTCAAGCACGAAATCAAAGGATCTGCTAGAGGAAACTTCTAGTGACAGAGAAGAGCACTATCGCAACTTGGGTTTTCAGGTTGTCTCAGGCTTGAGCAGTGAACTTCAGAATGTGAAGAAAGCAGCATCTATAGATGCTGATAGCTTAACTGCAACTGTTGCCAAACTTGGCCACACACTTTTAAAGTCTCGAGACTTCCTGAACAAAGACATGCAGAGTCTTGGGGAAGAGAGTCAGTTTAAACAGACTCTAAAAAGCTTTGTACAGAATGCCGAGGTCGATATCATGTCCCTCTTGGAAGAAGAAAAAAGAATTATGGATTTGGTGAAAAGCACTGGTGATTACTTCCATGGAAACGCAGGGAAAGATGAGGGCTTACGATTGTTTGTGATAGTAAGGGATTTTTTGATAATGGTAGATAAGACATGCCGAGAGATAAGGGAAGCGCAAAACAAGCGTATGAAAGGACATAGAAAGGCAGCATCTTCGTCGGATGCCAATAACCCTCCAACTCCTATTTCTTCTGATCTCCGACGACTGCCTTCTCCTGATCTCAATGAGCTGATTTTCCCTGCCATTGCCGATCGCCGGATGGATAACTCAAGTTCAGATGATGAGAGCCCATAG 2892 44.09 MGVVKRSCFCFVVLVILIYASVATSLKDQEIEEVFLIQLADPVTGDVNTEMAELLWIKCNLDLIQLKEAVDSFDLCSKESLRSSNGINSECQMLSKEKMKRMLSVMHPQVKQSLLDCLRRNFHVSGEDYDSKVWYTKYLESFFMPGNFRRKLSSRWLQSTSQVPAPAPTPTAETPFSGPAISLAPAPSSPEDPPSPPPAVPPRTPFFPPDSVNSGLQPSVDENSSNKASGTNGRTEKKNDNHIPVIIAVVVTASVTFVIVALIFLCYYKRSKFRRTDENHERPLLSLSLSEHSVGSSPKFSAFGNSIKEDKLTNQMSNLGPHKSTPSLDGNLHIASDGRHNSVHGATGIPNETGSSYMPGSTNGSVSFTSNTLPPLKPPPGRANPLPPEPPSSFKPPSSKTNPPLPPPPAPPPAPPPPSRPPGNSGRPGPPPPPPPAINKAGPRPPPPPKSGVPPPRPPPLAPKGATPPRPPPKHLPTSAPGEGGSMEDTADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQFNEEMIETLFGYAPVDRNKNDGKKESSSQDPSHQYIQIIDSKKAQNLSILLRALNVTKEEVCDAIQEGNELPPELIENLLKMAPTADEELKLRLFNGELSQLGPAERFLKSLVDMPFAFKRLESLLFMCTLQEDITVTKESFVNLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLADVKGKDGKTTLLQFVVQEIIRTEGIRAARTGTGSHSFSSTKSKDLLEETSSDREEHYRNLGFQVVSGLSSELQNVKKAASIDADSLTATVAKLGHTLLKSRDFLNKDMQSLGEESQFKQTLKSFVQNAEVDIMSLLEEEKRIMDLVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMVDKTCREIREAQNKRMKGHRKAASSSDANNPPTPISSDLRRLPSPDLNELIFPAIADRRMDNSSSDDESP 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9578757 9584842 - evm.model.ptg000002l.510 HCH12g1149 555996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1149 963 ProSiteProfiles Formin homology-2 (FH2) domain profile. 488 920 IPR015425 -
HCH12g1149 963 MobiDBLite consensus disorder prediction 373 478 - -
HCH12g1149 963 MobiDBLite consensus disorder prediction 905 939 - -
HCH12g1149 963 MobiDBLite consensus disorder prediction 210 232 - -
HCH12g1149 963 MobiDBLite consensus disorder prediction 186 208 - -
HCH12g1149 963 MobiDBLite consensus disorder prediction 539 558 - -
HCH12g1149 963 Pfam Formin Homology 2 Domain 491 894 IPR015425 -
HCH12g1149 963 MobiDBLite consensus disorder prediction 346 372 - -
HCH12g1149 963 SMART it6_source 488 909 IPR015425 -
HCH12g1149 963 MobiDBLite consensus disorder prediction 916 930 - -
HCH12g1149 963 SUPERFAMILY Formin homology 2 domain (FH2 domain) 431 910 - -
HCH12g1149 963 PANTHER FORMIN-RELATED 115 961 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
HCH12g1149 963 MobiDBLite consensus disorder prediction 315 331 - -
HCH12g1149 963 MobiDBLite consensus disorder prediction 161 238 - -
HCH12g1149 963 MobiDBLite consensus disorder prediction 315 493 - -
HCH12g1149 963 Gene3D Formin, FH2 domain 493 924 IPR042201 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1149 HCH-Chr12:9578757 HCH2g0022 HCH-Chr2:941933 2.50E-99 dispersed
HCH1g0992 HCH-Chr1:58015394 HCH12g1149 HCH-Chr12:9578757 1.60E-75 transposed
HCH4g1640 HCH-Chr4:15566808 HCH12g1149 HCH-Chr12:9578757 2.60E-77 transposed
HCH5g0214 HCH-Chr5:1215988 HCH12g1149 HCH-Chr12:9578757 2.90E-101 transposed
HCH12g1149 HCH-Chr12:9578757 HCH2g0759 HCH-Chr2:51235032 9.40E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1149 K28090 - csv:101213072 760.755