Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1152 ATGGGATCCCCTGAAAATCCCAATTGGTCGTTTGATTACGGTTTGATCGACGATATCTCTGTTCCGGATCCCAATTTTCCTTTCACGACTTCGAGTTTCTCGTGGGCGGTACAACCCTTGACTGCCACTCCTGATGTCTGTGTGGAAATTGATGGATCATTGGCCGATCTGGATAGCCGTTTAGAATCTGGCTCAAAGAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTACGGAGGGATAGGCTCAATGACAAGTTTCTGGAATTGGGCTCCATTCTGGATCCTGGAAGACCACCCAAAACAGACAAGGCTGCAGTTTTACTTGATGCTGTTCGAATGGTGACTCAGTTACGAAGCGAGTCCCAGAAGTTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAACGAGCTTCGCGACGAGAAGCAGAGGCTAAAGGCAGATAAGGAGAAGCTAGAGCAGCAAATGAAATCAGTGCATGCCCAACCTAGCTTCTTACCTCCAGCAATCCCCACATTTGCTGCTCAAGGTCAAGCTCCTGGGAATAAGTTAGTTCCTTTCATCGGTTACCACCCCGGAGTTGCTATGTGGCAGTTCATGCCGCCTGCCACGGTGGACACATCACAGGATCACGTTCTCCGGCCACCAGTTGCTTAA 705 47.94 MGSPENPNWSFDYGLIDDISVPDPNFPFTTSSFSWAVQPLTATPDVCVEIDGSLADLDSRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAVLLDAVRMVTQLRSESQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKEKLEQQMKSVHAQPSFLPPAIPTFAAQGQAPGNKLVPFIGYHPGVAMWQFMPPATVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9614208 9617109 + evm.model.ptg000002l.507 HCH12g1152 555999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1152 234 Gene3D - 78 152 IPR036638 GO:0046983(InterPro)
HCH12g1152 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
HCH12g1152 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983(InterPro)
HCH12g1152 234 Coils Coil 123 178 - -
HCH12g1152 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
HCH12g1152 234 FunFam Transcription factor bHLH34 66 124 - -
HCH12g1152 234 CDD bHLH_AtILR3_like 83 155 - -
HCH12g1152 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
HCH12g1152 234 PANTHER BHLH TRANSCRIPTION FACTOR 9 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1152 HCH-Chr12:9614208 HCH7g1322 HCH-Chr7:46133348 6.90E-27 dispersed
HCH12g1152 HCH-Chr12:9614208 HCH2g0758 HCH-Chr2:51219664 3.20E-48 wgd
HCH12g1152 HCH-Chr12:9614208 HCH3g0574 HCH-Chr3:3843115 4.80E-44 wgd
HCH12g1152 HCH-Chr12:9614208 HCH6g0752 HCH-Chr6:42023031 9.50E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32728 PF00010 HLH 1.10E-08 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1152 - - - 0.0