Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1161 ATGCAATCGCCTTACAAGGCTTTAGTTTACGTAAAATTATCGTTGCTGTTGTTGTTTTTTGTCACGTCAAATGATGTTCATGTTTGTCGTGCGCAAGATTACGACATCATGGGCGGTGATGTTGAAACGGCGGCACCACCTCCGGCGCAAGATGAATGTAATGGGATTTACTTGACGTACATGTTCATTTCGAGGGAAAAGGAATATCCGTACGTCAAGAATGTGTCAGCGCAGTCTTGGGGGTTCAAATCAGTGGCAACGATATTGAATGCGGAATCCACTGAGCTCAAAGCTTGGAAGATGTTTATTGGGTTTCAACATAGAGAGATATTGGTTGCGGCAGCCGGCGCCGTCGTGATGGACGGTTCTGATTTTCCCACTTTCGTTGGAAACGGGACGACTTTGGCCGGGTATCCACAGACTGACTTGAAAACGTCGATTGAAACAGCCGGAGATTATAGCCAAATTCAGGCGAGGATTGATCTGACTGGAACACAGTTTGGAGTGAAGACGTCCGGGGTACCGATGCCGAAGACGATACGTCTCGTCAATGATGGGTATACATGTCCTAAGCCTCATCGCCAAGGAAACAACTTGATGTATGTATGCTGCAAGAAAGACCCAAAATTCAAGTTAAAAGAAGGAAAAAGGACAAAATTCTTGCCTAGACGGAATGGTGATCTCTCACTCACCTATGACATTCTCCAAGCTTATGGAAACAACTATCTTGCCCAAGTCACCATTGATAATAACAACCCTCTTGGGAGGCTTGACCACTGGAACTTGACTTGGGAATGGATGAGAGGAGAGTTCATTTCCACCATGAGAGGAGCTTACACTCACAAAATAGACTTTTCTAGCTGTATTTATGGTCCTGCAGGCCAATATTATCAAGATCTTGATTTCTCTCAGATTATGAATTGTGAGAAGAAACCAGTCATTGCTGATCTCCCTGCTATTAGAGCTAATGATAGCAAAGTTGGGAAATTGCCTTATTGTTGTAGAAATGGCAGTATCTTGCCAACCCTGATGGATGAGAGCAAATCGAGGTCAATTTTCCAATTGCAAGTCTATAAACTTCCACCCGATCTTAACCGAACAGCTTTGTATCCACCGCAGAAATGGCAGATAACTGGTCTTCTTAATCCTACTTACAAATGTGGAGCTCCAATTAGAGTGGAACCAACAGAATTTCCAGACACGAGTGGACTTCAGGCCACCAGCAGTGCTATTGCAAGTTGGCAAGTCGTTTGCAACATTACTCGCCCGAAGGCCAAACAATCGAGGTGCTGTGTTTCCTTTTCGGCATATTACAATGATTCTGTGATTCCCTGCAACACTTGTGCCTGTGGATGTGAAGAGACTGATAATACTTGCAATCCGAATGCTAGTCCGATGCTTCTTCCAGGAGAAGAGCTACTCGTGCCTTTCGATAACAGAACGGTGAAGGCAAAAGCATGGGCTAAAATCAAACACTGGCCAATCCCCAAGAAATTGCCTTGTCCAGACAACTGTGGGGTTAGCATAAATTGGCACATTAACTCTGATTACGTCAATGGATGGACTGCTAGAATCACTCTTTTTAACTGGGAAGACTACCCCTTTGAGGATTGGTTTGCTGCAGTTCAATTGAACAAAGCTGCACAAGGTTATGAAAATGTATACTCATTCAATGGAACCAAATTTTCACAGATCAAAAACACAATCTTGTTCCAAGGTTTGCCAGGTTTGAATTACCTAATGGGAGAGACAAATGGGACTAATCCGAAAGTCGATCCACGAGTGCCGGGCAAGCAGCAATCAGTGATTTCTTTCACAAAAAAGCAATTGCATAACCTTAATATAAGAGAAGGTGATGGATTCCCCACAAAGGTATATTTCAATGGGGAAGAATGTGCACTTCCCCCAGAAATACCTTTAGGAAATGCAGGCTATCGGGTTCATATAAGATCGATACCACTAATGCTTGTCACAGTTCTTACTTTCATGCTCATGAAAGATCGATTTCGCTGA 2013 43.47 MQSPYKALVYVKLSLLLLFFVTSNDVHVCRAQDYDIMGGDVETAAPPPAQDECNGIYLTYMFISREKEYPYVKNVSAQSWGFKSVATILNAESTELKAWKMFIGFQHREILVAAAGAVVMDGSDFPTFVGNGTTLAGYPQTDLKTSIETAGDYSQIQARIDLTGTQFGVKTSGVPMPKTIRLVNDGYTCPKPHRQGNNLMYVCCKKDPKFKLKEGKRTKFLPRRNGDLSLTYDILQAYGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFISTMRGAYTHKIDFSSCIYGPAGQYYQDLDFSQIMNCEKKPVIADLPAIRANDSKVGKLPYCCRNGSILPTLMDESKSRSIFQLQVYKLPPDLNRTALYPPQKWQITGLLNPTYKCGAPIRVEPTEFPDTSGLQATSSAIASWQVVCNITRPKAKQSRCCVSFSAYYNDSVIPCNTCACGCEETDNTCNPNASPMLLPGEELLVPFDNRTVKAKAWAKIKHWPIPKKLPCPDNCGVSINWHINSDYVNGWTARITLFNWEDYPFEDWFAAVQLNKAAQGYENVYSFNGTKFSQIKNTILFQGLPGLNYLMGETNGTNPKVDPRVPGKQQSVISFTKKQLHNLNIREGDGFPTKVYFNGEECALPPEIPLGNAGYRVHIRSIPLMLVTVLTFMLMKDRFR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9696256 9699169 + evm.model.ptg000002l.498 HCH12g1161 556008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1161 670 Pfam COBRA-like protein 242 421 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH12g1161 670 PANTHER COBRA-LIKE PROTEIN 7 10 665 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1161 HCH-Chr12:9696256 HCH7g1047 HCH-Chr7:42430939 9.90E-220 dispersed
HCH12g1161 HCH-Chr12:9696256 HCH6g0773 HCH-Chr6:42505597 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1161 - - - 0.0