Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1168 ATGATTCACTCTGTGAAACAATCTCCTTTCAATTGCCCTGATGTTGTTTTCAGAAGAAAAATCTCACTTCCCACTCCACGATCCTTGTTTCTTCTTCCTTCTTTACCTTTGCAAAAACCTCAAAAAGCTTTGTGTGTTTCTTCTTTTGAGAATTTTGGATCATTGAGAGCTAGGAAAGCTAATTTGATCAAATGTGAGGCTTATGAGGCTGATCGATCGCAGCCGATCGAATCGGGAATTGAATTGCCGAAGAATTCGGCCCCTTCGGAGGCTGCAAAGAAGGTGAAGATTGGATCTTACTTTGCCTTGTGGTGGGGTTTGAATGTGGTGTTCAATATTTATAATAAGAAAGTATTGAATGCATATCCATATCCATGGTTAACTTCCACTTTGTCTCTTGCTGCTGGATCTTTGATCATGTTGATCTCGTGGTTGACGAGAATCGCTGAGGCGCCGAAGACCGATTTCGAGTTTTGGAAGACTTTGCTTCCAGTTGCAATCGCCCATACTATCGGACATGTAGCTGCAACTGTAAGTATGTCAAAGGTTGCTGTGTCATTCACCCACATCATCAAGAGTGGTGAGCCTGCTTTTAGCGTACTGGTTTCAAGGCTCCTCTTGGGTGAGACCTTCCCAATTACTGTCTACTTGTCCCTCCTCCCGATTATCGGTGGATGTGCTCTCGCTGCTGTGACTGAGCTCAACTTTAACATGATCGGTTTCATGGGGGCCATGATATCAAACTTGGCATTTGTTTTTCGTAACATATTTTCGAAGAGGGGCATGAAGGGAAAGTCGGTTAGCGGGATGAACTACTATGCGTGTTTATCTATTTTTTCTTTGTTAATACTGACGCCGTTTGCATTTGCTGTGGAGGGACCACAATTGTGGGCTGAGGGATGGAAAACTGCAATCTCTCAAATTGGACCTCATTTCGCATGGTGGGTTGCTGCACAAAGCATATTCTATCATCTATACAATCAAGTGTCTTACATGTCCTTGGACGAGATTTCTCCCTTGACGTTTAGCGTTGGAAACACCATGAAACGTATATCTGTCATCGTTTCTTCCATCATCATCTTCCGCACGCCTGTTCAGCCAGTGAATGCTCTTGGAGCTGCCATTGCAGTTCTCGGAACCTTTATGTATTCGCAGGCGAAGCAATGA 1167 43.87 MIHSVKQSPFNCPDVVFRRKISLPTPRSLFLLPSLPLQKPQKALCVSSFENFGSLRARKANLIKCEAYEADRSQPIESGIELPKNSAPSEAAKKVKIGSYFALWWGLNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLIMLISWLTRIAEAPKTDFEFWKTLLPVAIAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRLLLGETFPITVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSIFSLLILTPFAFAVEGPQLWAEGWKTAISQIGPHFAWWVAAQSIFYHLYNQVSYMSLDEISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAVLGTFMYSQAKQ 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9962149 9965683 + evm.model.ptg000002l.491 HCH12g1168 556015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1168 388 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 96 387 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
HCH12g1168 388 PANTHER SOLUTE CARRIER FAMILY 35 91 387 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
HCH12g1168 388 Pfam Triose-phosphate Transporter family 96 384 IPR004853 -
HCH12g1168 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 138 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1168 HCH-Chr12:9962149 HCH7g1518 HCH-Chr7:47715233 1.90E-85 dispersed
HCH12g1168 HCH-Chr12:9962149 HCH14g0830 HCH-Chr14:36209074 6.50E-155 wgd
HCH12g1168 HCH-Chr12:9962149 HCH6g0777 HCH-Chr6:42561872 1.40E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1168 K15283 - csv:101220046 626.32