Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1197 ATGCCATCTGCTAAAGATCCATTTTATGTTGTGAAGGATGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTATCATCAATGGGAAAGAATATCTGCTGATACAGGAGAGAGAGTGCATCTCTCAAAAGAATTGCTCAGTACCTGTGAGAGCATTGATTGGCAGGTGGATGAGTTGGACAAAGCTATTGCTGTAGCAGCAAGAGATCCTTCTTGGTATGGCATTGATGATGTAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTCGTACGCAGATTGGAAATATAAAGAAAGTCGTGGATGCTGGAAAGGAGCCCACTGGAACTAGTGCAAATGGGATGCGTCGAGAATTGATGAGAATACCTAATTCACATGAAACAGACAGATCGAACTTATATAGATCCCAAGATAATGATGACTTCATCACGTCTGAATCAGATCGGCAGCTACTTCTCATAAAGCAACAGGATGAGGAGCTCGATGAGCTGAGTGCGAGCGTGGAGAGAATTGGAGGTGTTGGGCTTATCATACATGAAGAGCTTCTGGCACAGGATAAAATAATTGATGAGCTAGGAACGGAAATGGACAGTACTTCAAATCGTCTTGATTTTGTTCAGAAAAAAGTTGCTGTGGTTATGAAGAAGGCTGGTGCCAAGGGCCAGATAATGATGATTCTGTTTTTGGTGGTTTTATTCATCATCCTCTTTGTCTTGGTATTCTTAACCTAA 735 41.5 MPSAKDPFYVVKDEIQESIDKLQSSYHQWERISADTGERVHLSKELLSTCESIDWQVDELDKAIAVAARDPSWYGIDDVELEKRRRWTSTARTQIGNIKKVVDAGKEPTGTSANGMRRELMRIPNSHETDRSNLYRSQDNDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLIIHEELLAQDKIIDELGTEMDSTSNRLDFVQKKVAVVMKKAGAKGQIMMILFLVVLFIILFVLVFLT 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10572101 10575998 - evm.model.ptg000002l.462 HCH12g1197 556044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1197 244 Gene3D - 159 223 - -
HCH12g1197 244 Gene3D - 2 104 - -
HCH12g1197 244 PANTHER SYNTAXIN 11 231 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH12g1197 244 CDD SNARE_NTD_AtSYP61-like 6 102 - -
HCH12g1197 244 FunFam syntaxin-61 isoform X1 155 216 - -
HCH12g1197 244 FunFam Syntaxin 10 3 105 - -
HCH12g1197 244 SMART tSNARE_6 147 214 IPR000727 -
HCH12g1197 244 Pfam SNARE domain 189 240 IPR000727 -
HCH12g1197 244 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH12g1197 244 SUPERFAMILY SNARE fusion complex 151 214 - -
HCH12g1197 244 Coils Coil 190 210 - -
HCH12g1197 244 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
HCH12g1197 244 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 152 214 IPR000727 -
HCH12g1197 244 Coils Coil 12 32 - -
HCH12g1197 244 CDD SNARE_Qc 155 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1197 K08500 - - csv:101212527 374.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0844 HCH-Chr6:43185854 HCH12g1197 HCH-Chr12:10572101 7.80E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0394 . 8 339 SNARE and Associated Proteins AT3G24350 66.5 1.1e-103 373.6
HCH9g0881 . 1 308 SNARE and Associated Proteins AT1G08560 66.6 7.6e-106 380.6
HCH14g0577 . 1 304 SNARE and Associated Proteins AT2G18260 54.9 3.3e-85 312.0
HCH11g0485 . 19 279 SNARE and Associated Proteins AT3G11820 81.6 5.7e-117 417.5
HCH9g1199 . 27 282 SNARE and Associated Proteins AT3G11820 73.0 1.0e-102 370.2
HCH3g0609 . 21 280 SNARE and Associated Proteins AT3G11820 65.8 1.8e-94 342.8
HCH9g1403 . 31 285 SNARE and Associated Proteins AT3G11820 51.0 1.9e-67 253.1
HCH11g0485 . 1 279 SNARE and Associated Proteins AT3G52400 64.3 4.8e-93 338.2
HCH9g1199 . 1 282 SNARE and Associated Proteins AT3G52400 60.5 1.9e-86 316.2
HCH3g0609 . 1 280 SNARE and Associated Proteins AT3G52400 59.0 9.0e-84 307.4
HCH3g0609 . 1 295 SNARE and Associated Proteins AT4G03330 69.1 1.4e-107 386.3
HCH11g0485 . 1 279 SNARE and Associated Proteins AT4G03330 59.3 3.9e-86 315.1
HCH9g1199 . 1 288 SNARE and Associated Proteins AT4G03330 53.8 9.2e-80 293.9
HCH9g1403 . 1 290 SNARE and Associated Proteins AT4G03330 50.3 1.5e-69 260.0
HCH3g0609 . 1 304 SNARE and Associated Proteins AT1G61290 78.3 3.2e-125 444.9
HCH11g0485 . 1 279 SNARE and Associated Proteins AT1G61290 63.5 2.1e-92 335.9
HCH9g1199 . 1 298 SNARE and Associated Proteins AT1G61290 57.5 1.1e-85 313.5
HCH3g0609 . 1 304 SNARE and Associated Proteins AT1G11250 76.3 6.2e-121 430.6
HCH11g0485 . 1 279 SNARE and Associated Proteins AT1G11250 63.1 6.4e-94 340.9
HCH9g1199 . 1 288 SNARE and Associated Proteins AT1G11250 56.4 3.2e-85 312.0
HCH9g1403 . 1 308 SNARE and Associated Proteins AT3G03800 72.4 3.5e-119 424.9
HCH2g0746 . 1 304 SNARE and Associated Proteins AT3G03800 55.3 9.2e-80 293.9
HCH9g1403 . 1 203 SNARE and Associated Proteins AT5G08080 77.8 4.7e-81 297.7
HCH2g0746 . 1 203 SNARE and Associated Proteins AT5G08080 58.1 7.0e-53 204.1
HCH6g1130 . 1 256 SNARE and Associated Proteins AT5G16830 58.4 5.3e-74 274.6
HCH6g1130 . 1 256 SNARE and Associated Proteins AT5G46860 65.6 2.8e-80 295.4
HCH6g1130 . 1 256 SNARE and Associated Proteins AT4G17730 59.1 2.7e-72 268.9
HCH6g1130 . 65 256 SNARE and Associated Proteins AT1G32270 61.5 1.1e-52 204.1
HCH1g0387 . 1 340 SNARE and Associated Proteins AT5G05760 64.8 6.5e-111 397.5
HCH4g0394 . 8 339 SNARE and Associated Proteins AT3G24350 66.5 1.1e-103 373.6
HCH10g0899 . 1 325 SNARE and Associated Proteins AT5G26980 77.8 2.1e-130 462.2
HCH4g1049 . 1 320 SNARE and Associated Proteins AT5G26980 66.5 3.0e-105 378.6
HCH4g1049 . 1 320 SNARE and Associated Proteins AT4G02195 67.7 9.0e-110 393.7
HCH10g0899 . 1 327 SNARE and Associated Proteins AT4G02195 65.3 6.1e-106 380.9
HCH10g0899 . 1 326 SNARE and Associated Proteins AT3G05710 76.3 3.3e-131 464.9
HCH4g1049 . 1 320 SNARE and Associated Proteins AT3G05710 64.3 3.8e-103 371.7
HCH12g1219 . 1 233 SNARE and Associated Proteins AT1G16240 72.1 1.1e-88 323.2
HCH6g0844 . 41 270 SNARE and Associated Proteins AT1G16240 64.3 4.5e-79 291.2
HCH12g1219 . 1 233 SNARE and Associated Proteins AT1G79590 71.2 3.9e-87 318.2
HCH6g0844 . 40 270 SNARE and Associated Proteins AT1G79590 64.5 4.7e-80 294.7
HCH12g1197 . 54 244 SNARE and Associated Proteins AT1G28490 69.3 1.2e-64 243.0
HCH11g0272 . 1 264 SNARE and Associated Proteins AT3G09740 78.9 5.2e-111 397.5
HCH2g1168 . 1 265 SNARE and Associated Proteins AT3G09740 68.2 1.4e-95 346.3
HCH2g1168 . 1 265 SNARE and Associated Proteins AT3G45280 68.5 1.2e-94 343.2
HCH11g0272 . 1 264 SNARE and Associated Proteins AT3G45280 64.4 1.8e-87 319.3
HCH11g0272 . 1 261 SNARE and Associated Proteins AT3G61450 68.2 3.9e-95 344.7
HCH2g1168 . 1 262 SNARE and Associated Proteins AT3G61450 59.5 1.8e-84 309.3
HCH13g0530 . 65 309 SNARE and Associated Proteins AT1G51740 74.0 1.5e-93 339.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003549 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 4 0 44