Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1197 ATGCCATCTGCTAAAGATCCATTTTATGTTGTGAAGGATGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTATCATCAATGGGAAAGAATATCTGCTGATACAGGAGAGAGAGTGCATCTCTCAAAAGAATTGCTCAGTACCTGTGAGAGCATTGATTGGCAGGTGGATGAGTTGGACAAAGCTATTGCTGTAGCAGCAAGAGATCCTTCTTGGTATGGCATTGATGATGTAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTCGTACGCAGATTGGAAATATAAAGAAAGTCGTGGATGCTGGAAAGGAGCCCACTGGAACTAGTGCAAATGGGATGCGTCGAGAATTGATGAGAATACCTAATTCACATGAAACAGACAGATCGAACTTATATAGATCCCAAGATAATGATGACTTCATCACGTCTGAATCAGATCGGCAGCTACTTCTCATAAAGCAACAGGATGAGGAGCTCGATGAGCTGAGTGCGAGCGTGGAGAGAATTGGAGGTGTTGGGCTTATCATACATGAAGAGCTTCTGGCACAGGATAAAATAATTGATGAGCTAGGAACGGAAATGGACAGTACTTCAAATCGTCTTGATTTTGTTCAGAAAAAAGTTGCTGTGGTTATGAAGAAGGCTGGTGCCAAGGGCCAGATAATGATGATTCTGTTTTTGGTGGTTTTATTCATCATCCTCTTTGTCTTGGTATTCTTAACCTAA 735 41.5 MPSAKDPFYVVKDEIQESIDKLQSSYHQWERISADTGERVHLSKELLSTCESIDWQVDELDKAIAVAARDPSWYGIDDVELEKRRRWTSTARTQIGNIKKVVDAGKEPTGTSANGMRRELMRIPNSHETDRSNLYRSQDNDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLIIHEELLAQDKIIDELGTEMDSTSNRLDFVQKKVAVVMKKAGAKGQIMMILFLVVLFIILFVLVFLT 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10572101 10575998 - evm.model.ptg000002l.462 HCH12g1197 556044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1197 244 Gene3D - 159 223 - -
HCH12g1197 244 Gene3D - 2 104 - -
HCH12g1197 244 PANTHER SYNTAXIN 11 231 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH12g1197 244 CDD SNARE_NTD_AtSYP61-like 6 102 - -
HCH12g1197 244 FunFam syntaxin-61 isoform X1 155 216 - -
HCH12g1197 244 FunFam Syntaxin 10 3 105 - -
HCH12g1197 244 SMART tSNARE_6 147 214 IPR000727 -
HCH12g1197 244 Pfam SNARE domain 189 240 IPR000727 -
HCH12g1197 244 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH12g1197 244 SUPERFAMILY SNARE fusion complex 151 214 - -
HCH12g1197 244 Coils Coil 190 210 - -
HCH12g1197 244 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
HCH12g1197 244 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 152 214 IPR000727 -
HCH12g1197 244 Coils Coil 12 32 - -
HCH12g1197 244 CDD SNARE_Qc 155 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0844 HCH-Chr6:43185854 HCH12g1197 HCH-Chr12:10572101 7.80E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1197 K08500 - csv:101212527 374.4