Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1205 ATGGCGTGGACAAGAGGCCCAGCAATCGGCCACGGCTCCTCAGCCACAGTCTATCTCGCCGCCGCCGCCGCCTCTTCCAAACAACCATTCGCCGTAAAATCCACACACCTTTCTTCCTCAACATTCTTACAAAAAGAACAAATTTTCCTTTCCAAATTAGCCTCTCCGTACATCGTTAAATGCTTAGGCTACGATATCACTACTGAAAATAGCAACTCTTCATTCAATCTTTTCATTGAATACGTTCCCGGCGGAACCCTTTGGGATGAAATTCAAAGACATGGAGGGAAAATAAGGGAAGAACATATTATCAGAGATTACACGTGGCAGATTCTCAATGGGTTGGAATATCTTCATTCTAATGGGATAGCGCATTGTGATATTAAGAGCCGGAATATTTTGATGGGTGATGATGGATTGAAAATTGCTGATCTGGGTTGTGCTAAACTGGTCGGGAAAGACGCCGGAAATAATGGGTTTTGCGGTTCGCCGGCGTTCATGGCGCCGGAGGTTGTGAGAGGTGAGGAGCAAGGGTTTGAGGCTGATGTTTGGGCTTTTGGATGTACGGTGATTGAGATGGTAACTGGGAATCATCCGTGGTCGGAGATTAGTGATCCTGTATCGGTTATTTATCGAATTGGATTTTCCGATGAGTTGCCGGAGTTTCCAGAATGGCTATCGGAGAAAGCTAAGGATTTTCTCACAAAGTGTTTGATGAAAGATCCCAAAGAACGGCGGACGGTTAAAGAGCTTCTTCAACACCCGTTTCTTCAGGATTTGGGTTGTGATAATTCAGAGCCACAAAAGGGATTCTTGAAGATGAATGGCTCTCCTAGTTGTGTGTTGGATCAAAACTTTTGGGATTCAATGGAAGATTCAGAGACTCCATTGAATTTGACCCATCAAAGTTCTTGCTTGAATTTCAATTCCTTTGGAGAAAGGATTCAAAACTTGACTAAAAATTCCATTTCAGAAGTACCCAATTGGGATTTTGATGGGGATCAAGATTGGGTCACAGTAAGAAGCAATAGCTTCAATGAAATTGATCTGATAATGGCTGATGAGCCTCTGATTCCAGAAAAACCTGCCATTATTTCAGTTCTGCATGAAGAAGAAGAAGAAGAAAGTTTAGAATTGTATGAGGATTTAATATTATTGTCTTTAGAGAATGATTATAGTTCCATAAACAGTAGGAGAATGAGATCAGAAACAGTGTTTGAGTGTGTAGAAAATGATTTTGTTGTAGGAATTGTAAAATTTGAAGGATTAAATGAAAATTCTTCTTCTCCATTGCAGATTGATTTCTTGTTCTATGCTAATCTTCTTTCTCATTGTTTCTTCTATTATTGTTATTTTTTATTTTATTTAAATCCCTTCTTTTTATAA 1386 39.83 MAWTRGPAIGHGSSATVYLAAAAASSKQPFAVKSTHLSSSTFLQKEQIFLSKLASPYIVKCLGYDITTENSNSSFNLFIEYVPGGTLWDEIQRHGGKIREEHIIRDYTWQILNGLEYLHSNGIAHCDIKSRNILMGDDGLKIADLGCAKLVGKDAGNNGFCGSPAFMAPEVVRGEEQGFEADVWAFGCTVIEMVTGNHPWSEISDPVSVIYRIGFSDELPEFPEWLSEKAKDFLTKCLMKDPKERRTVKELLQHPFLQDLGCDNSEPQKGFLKMNGSPSCVLDQNFWDSMEDSETPLNLTHQSSCLNFNSFGERIQNLTKNSISEVPNWDFDGDQDWVTVRSNSFNEIDLIMADEPLIPEKPAIISVLHEEEEEESLELYEDLILLSLENDYSSINSRRMRSETVFECVENDFVVGIVKFEGLNENSSSPLQIDFLFYANLLSHCFFYYCYFLFYLNPFFL 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10808870 10810255 - evm.model.ptg000002l.454 HCH12g1205 556052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1205 461 SUPERFAMILY Protein kinase-like (PK-like) 4 308 IPR011009 -
HCH12g1205 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1205 461 SMART serkin_6 3 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1205 461 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524(InterPro)
HCH12g1205 461 CDD STKc_MAPKKK 3 257 - -
HCH12g1205 461 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1205 461 Gene3D Transferase(Phosphotransferase) domain 1 3 315 - -
HCH12g1205 461 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 258 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH12g1205 461 Pfam Protein kinase domain 5 257 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1205 HCH-Chr12:10808870 HCH7g0244 HCH-Chr7:1682548 8.40E-85 dispersed
HCH12g1205 HCH-Chr12:10808870 HCH2g0727 HCH-Chr2:50980420 2.00E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81134 PF00069 Pkinase 6.10E-58 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1205 K20716 - csv:101205426 402.519