Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1219 ATGGCTGCTTCTTTGGAATCATGGACGAAGGAATATAATGAATCCTTGAAACTGTCTGAAGATATCAATCGCATGATTTCTGAGCGAAATTCACTTGCTGCATCTGGACCGGAAGCTCAGCGTCATGCCTCGGCTATTCGTAGGAAGATCACAATATTGGGTACTAAACTTGATACATTACAGTCTCTTTTACCCAAGGTTCAAGGAAAGCATCCCATATCAGAGAAAGAGATGAATCGTCGGAAGGACATGCTTGCAAATTTGAGATCAAAAGTTAACCAGATGGCTTCAACTTTGAACATGTCAAACTTTGCTATCCGTGATAGCTTACTTGGCCCAGAAATAAAACCAGCTGATGTCATGAGCAGAACATCAGGCTTTGACAACCAAGGCCTAGTTGGTTTTCAACGACAAATAATGAAAGAGCAAGATGAAGACCTTGAGAAACTGGAATCGACTGTAATTAGCACAAAACATATTGCGTTGGCAGTGAATGAAGAACTTGACCTTCACACCAGACTAATTGATGATTTGGATGAACATGTCGATGTTACGGATTCTCGATTAAGGCGAGTGCAGAAGAGGCTAGCAATGTTGAACAAGCGAACCAAGGGTGGTTGCACTTGCATGGGCATGATGTTATCAGTTGTTGGTATTGCTGTTCTTGTTGCTGTGGTTTGGCTACTCATCAAATATTTGTAG 702 41.6 MAASLESWTKEYNESLKLSEDINRMISERNSLAASGPEAQRHASAIRRKITILGTKLDTLQSLLPKVQGKHPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFAIRDSLLGPEIKPADVMSRTSGFDNQGLVGFQRQIMKEQDEDLEKLESTVISTKHIALAVNEELDLHTRLIDDLDEHVDVTDSRLRRVQKRLAMLNKRTKGGCTCMGMMLSVVGIAVLVAVVWLLIKYL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11447883 11449619 + evm.model.ptg000002l.440 HCH12g1219 556066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1219 233 PANTHER SYNTAXIN 11 210 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH12g1219 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
HCH12g1219 233 SUPERFAMILY SNARE fusion complex 128 199 - -
HCH12g1219 233 SMART tSNARE_6 132 199 IPR000727 -
HCH12g1219 233 Pfam SNARE domain 174 224 IPR000727 -
HCH12g1219 233 CDD SNARE_Qc 140 197 - -
HCH12g1219 233 Gene3D - 139 201 - -
HCH12g1219 233 FunFam syntaxin-51 isoform X2 139 201 - -
HCH12g1219 233 SUPERFAMILY t-snare proteins 27 100 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1219 HCH-Chr12:11447883 HCH6g0844 HCH-Chr6:43185854 2.70E-92 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1219 K08503 - csv:101208669 385.185