Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1234 ATGGGAGTTCTTGAGACTGTTAAAAACATAGGTAGCGACCACGCCCAGGTGGTCCCATTAACGTTGTTCGTTGCTGTTCTTTGTCTGTGCTTAGTTATTGGTCATTTGCTCGAAGAAAACCGTTGGGTTAATGAATCCATTACTGCCATTATCATTGGAGGTATTACTGGAAAAATCATATTGTTCTGTAGCAAGGGGAAAAGTTCTCATATCCTGACTTTTGATGAAGAATTGTTCTTCATATATCTTCTTCCACCAATAATATTCAATGCTGGATTTCAAGTGAAAAAGAAGCAGTTCTTCCATAACTTCTTGACCATCATGCTGTTTGGGGTGATTGGTGTTTTTATATCTGTAGGCATCATAACAGCTGGTAGCTGGTGGCTGTTTCCGAGGCTGGGCTTTCGGGGTCTGACACCACGGGACTATGTTGCTGTAGGTACTATTTTTGCATCCACAGATACAGTATGCACCCTGCAGGTACTAAATCAAGAGGAAACTCCTTTCCTATACAGCCTGGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTTAATGCAGTTCAGAAGATTGATATCACGAGGCTTAACAGCAAGACGATCCTTCAAATTCTTGGAGATTTTTGTTACCTATTTTCTACTAGCACTGTTCTTGGAGTAACTTCTGGGCTTCTGACGGCATATGTCCTTAAGACCTTATACTTTGGAAGACATTCGAGTGTGCGGGAGCTTTCTATAATGGTTTTAATGGCTTATTTGTCCTACATGCTAGCGGAGCTATTGGAGTTGAGTGGAATTCTTACGGTTTTCTTTTGCGGCGTAATCATGTCACACTATGCTTGGCACAATGTGACTGAGAGTTCAAGAATTACCACCAGGCATGTATTTTCAATGATGTCGTTTGTTGCTGAAACTTTCATATTTCTCTATGTGGGCATGGATGCTCTTGACATTGAGAAGTGGAAGATGACCAAATTAAGTTTTTGGAAGTTGATTGGTACATATAGCACTATAATCTTCTTGATATTGCTTAGTCGTGCGGCCTTTGTATTTCCACTATCTGCTTTATCCAATTACTTTAGTAAACGTGATGGTAGACCGTCTTCTTCAATCACGTTTAAACAACAGACCGTAATATGGTGGGCTGGTCTTATGAGAGGAGCTGTATCCATTGCTCTGGCTTTTAAACAGTTCACATACTCGGGGGTTACAATGGATCCGGTCAATGCGACAATGATCACCGACACCATTGTCGTTGTTCTCTTCAGTACAGTGGTGTTTGGGTTTCTGACAAAGCCACTCATAAGGTATCTGCTTCCTCATCACCAATCAACCAACACTGCAAGCAATTCGGAACCGAAGTGCCCCCCCAAAGATGATATAACTCTCCCTTTGCTCTCCATGGAAGAGTCTGTTTCTACCAATATCCTTCGTGCGAAGGACAGTTTGTCAATGTTAATAGAAAGGCCTGTTTACACCATACATTTCTACTGGAGGAAATTTGATGATTCCTACATGAGACCTATATTTGGAGGACCTCGCAACAACCAACCCGGTCCCGGTTGCTAG 1581 42.0 MGVLETVKNIGSDHAQVVPLTLFVAVLCLCLVIGHLLEENRWVNESITAIIIGGITGKIILFCSKGKSSHILTFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISVGIITAGSWWLFPRLGFRGLTPRDYVAVGTIFASTDTVCTLQVLNQEETPFLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNSKTILQILGDFCYLFSTSTVLGVTSGLLTAYVLKTLYFGRHSSVRELSIMVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTESSRITTRHVFSMMSFVAETFIFLYVGMDALDIEKWKMTKLSFWKLIGTYSTIIFLILLSRAAFVFPLSALSNYFSKRDGRPSSSITFKQQTVIWWAGLMRGAVSIALAFKQFTYSGVTMDPVNATMITDTIVVVLFSTVVFGFLTKPLIRYLLPHHQSTNTASNSEPKCPPKDDITLPLLSMEESVSTNILRAKDSLSMLIERPVYTIHFYWRKFDDSYMRPIFGGPRNNQPGPGC 526
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 11917744 11925067 - evm.model.ptg000002l.425 HCH12g1234 556081
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1234 526 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g1234 526 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g1234 526 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g1234 526 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g1234 526 NCBIfam sodium/hydrogen exchanger 3 20 454 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g1234 526 PANTHER SODIUM/HYDROGEN EXCHANGER 18 519 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
HCH12g1234 526 Gene3D - 16 448 IPR038770 -
HCH12g1234 526 Pfam Sodium/hydrogen exchanger family 27 439 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1234 HCH-Chr12:11917744 HCH8g0159 HCH-Chr8:6006909 9.70E-170 dispersed
HCH12g1234 HCH-Chr12:11917744 HCH6g1660 HCH-Chr6:49508646 3.50E-172 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1234 - - - 0.0