Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g1234 | ATGGGAGTTCTTGAGACTGTTAAAAACATAGGTAGCGACCACGCCCAGGTGGTCCCATTAACGTTGTTCGTTGCTGTTCTTTGTCTGTGCTTAGTTATTGGTCATTTGCTCGAAGAAAACCGTTGGGTTAATGAATCCATTACTGCCATTATCATTGGAGGTATTACTGGAAAAATCATATTGTTCTGTAGCAAGGGGAAAAGTTCTCATATCCTGACTTTTGATGAAGAATTGTTCTTCATATATCTTCTTCCACCAATAATATTCAATGCTGGATTTCAAGTGAAAAAGAAGCAGTTCTTCCATAACTTCTTGACCATCATGCTGTTTGGGGTGATTGGTGTTTTTATATCTGTAGGCATCATAACAGCTGGTAGCTGGTGGCTGTTTCCGAGGCTGGGCTTTCGGGGTCTGACACCACGGGACTATGTTGCTGTAGGTACTATTTTTGCATCCACAGATACAGTATGCACCCTGCAGGTACTAAATCAAGAGGAAACTCCTTTCCTATACAGCCTGGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTTAATGCAGTTCAGAAGATTGATATCACGAGGCTTAACAGCAAGACGATCCTTCAAATTCTTGGAGATTTTTGTTACCTATTTTCTACTAGCACTGTTCTTGGAGTAACTTCTGGGCTTCTGACGGCATATGTCCTTAAGACCTTATACTTTGGAAGACATTCGAGTGTGCGGGAGCTTTCTATAATGGTTTTAATGGCTTATTTGTCCTACATGCTAGCGGAGCTATTGGAGTTGAGTGGAATTCTTACGGTTTTCTTTTGCGGCGTAATCATGTCACACTATGCTTGGCACAATGTGACTGAGAGTTCAAGAATTACCACCAGGCATGTATTTTCAATGATGTCGTTTGTTGCTGAAACTTTCATATTTCTCTATGTGGGCATGGATGCTCTTGACATTGAGAAGTGGAAGATGACCAAATTAAGTTTTTGGAAGTTGATTGGTACATATAGCACTATAATCTTCTTGATATTGCTTAGTCGTGCGGCCTTTGTATTTCCACTATCTGCTTTATCCAATTACTTTAGTAAACGTGATGGTAGACCGTCTTCTTCAATCACGTTTAAACAACAGACCGTAATATGGTGGGCTGGTCTTATGAGAGGAGCTGTATCCATTGCTCTGGCTTTTAAACAGTTCACATACTCGGGGGTTACAATGGATCCGGTCAATGCGACAATGATCACCGACACCATTGTCGTTGTTCTCTTCAGTACAGTGGTGTTTGGGTTTCTGACAAAGCCACTCATAAGGTATCTGCTTCCTCATCACCAATCAACCAACACTGCAAGCAATTCGGAACCGAAGTGCCCCCCCAAAGATGATATAACTCTCCCTTTGCTCTCCATGGAAGAGTCTGTTTCTACCAATATCCTTCGTGCGAAGGACAGTTTGTCAATGTTAATAGAAAGGCCTGTTTACACCATACATTTCTACTGGAGGAAATTTGATGATTCCTACATGAGACCTATATTTGGAGGACCTCGCAACAACCAACCCGGTCCCGGTTGCTAG | 1581 | 42.0 | MGVLETVKNIGSDHAQVVPLTLFVAVLCLCLVIGHLLEENRWVNESITAIIIGGITGKIILFCSKGKSSHILTFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISVGIITAGSWWLFPRLGFRGLTPRDYVAVGTIFASTDTVCTLQVLNQEETPFLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNSKTILQILGDFCYLFSTSTVLGVTSGLLTAYVLKTLYFGRHSSVRELSIMVLMAYLSYMLAELLELSGILTVFFCGVIMSHYAWHNVTESSRITTRHVFSMMSFVAETFIFLYVGMDALDIEKWKMTKLSFWKLIGTYSTIIFLILLSRAAFVFPLSALSNYFSKRDGRPSSSITFKQQTVIWWAGLMRGAVSIALAFKQFTYSGVTMDPVNATMITDTIVVVLFSTVVFGFLTKPLIRYLLPHHQSTNTASNSEPKCPPKDDITLPLLSMEESVSTNILRAKDSLSMLIERPVYTIHFYWRKFDDSYMRPIFGGPRNNQPGPGC | 526 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 11917744 | 11925067 | - | evm.model.ptg000002l.425 | HCH12g1234 | 556081 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g1234 | 526 | PRINTS | Na+/H+ exchanger signature | 147 | 157 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH12g1234 | 526 | PRINTS | Na+/H+ exchanger signature | 78 | 89 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH12g1234 | 526 | PRINTS | Na+/H+ exchanger signature | 107 | 115 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH12g1234 | 526 | PRINTS | Na+/H+ exchanger signature | 92 | 106 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH12g1234 | 526 | NCBIfam | sodium/hydrogen exchanger 3 | 20 | 454 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH12g1234 | 526 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 18 | 519 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| HCH12g1234 | 526 | Gene3D | - | 16 | 448 | IPR038770 | - | |
| HCH12g1234 | 526 | Pfam | Sodium/hydrogen exchanger family | 27 | 439 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g1234 | HCH-Chr12:11917744 | HCH8g0159 | HCH-Chr8:6006909 | 9.70E-170 | dispersed | |
| HCH12g1234 | HCH-Chr12:11917744 | HCH6g1660 | HCH-Chr6:49508646 | 3.50E-172 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g1234 | - | - | - | 0.0 |