Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1235 ATGAGAAATCTTCCGACAATGTCTCTCTTACTTCTTCTTCTTCTTCACTCATTCCTCATCTTAGTTTCTTCTCAAAAATCTAACAACACCAGTCCATGGCAAACTCTTACTGGGAAAGCTCCTGCTGTTATAGCGCGTGGTGGATTTTCAGGGCTATTTCCTGATTCAAGTTCTTATGCTTATAGTGTAGCGTTATCACTTAGTGTTCCTGAAGTTGTATTATGGTGTGATGTTCAATTAACTAAAGATGGAGCTGGTATTTGTCTCCCTGATTTGATTCTTGATAATTCTACTAATGCTGGATTTGTTTTTAGACCAAATCTTGCTAAGGTTTATCTTGTTAATGGAGTTCCTGTTACTGGTTTGTTCACTGTTGATTTCAATCTTCAAGATCTCGCTGATAATGTCAATCTTGTTCAAGGTATCTATTCTCGATCTAATAAGTTTGATGGCAATGGGTTTCAAATTCTAACTGTTGAAGATGTGGCTAAGGAATTCAAGCCACCGGGATTTTGGCTGAATATTCAGCATGATGCATTCTTCACACAACACAATTTGAGCATGAGAAACTTTGTAATTACTGTATCCAGACGCGTCATTGTTAATTATATTTCATCACCAGAGGTGGGATTTCTGACAAGTATAGCAGCAAGATTTAAACCCAGCACAACGAAGCTAGTTTTTCTGTTTTTAGGCCAAGATGATATTGAGCTCACTACAAACCAGACTTACGGTTCTCTTCTGAGAAATCTCACCTTTATTAAGACATTTGCTTCTGGAATTATTGTTCCTAAGACTTACATATGGCCTATTGATAAAGATGGTTACTTACTGTCTCAAACCTCTCTTGTTTCTGATGCTCATAAAGCACAATTAGAAGTTTTTGCATCAGAGTTCTATAATGACCTTCCATTAAGCTACAACTACAGTTACGATCCAATTACCGAGTACCTGTCTTACGTTGACAATGATAAATTTTCAGTTGATGGTGTGCTGACTGATTTCCCTCTTACTTCCTCGCAAGCCAGAGATTGTTTTGCTCATTTGGATAAGAATGCAAAAATTCAAGACAAGCCTTTGATAATTTCAAAATTTGGAGCTAGTGGAGACTATCCTGCTTGTACTGACTTGGCGTATACCAAGGCTATTTTAGATGGTACGGAAGTGCTCGACTGTCCTGTTCAAATAACAAAGGATGGGATACCAATTTGCTTAAGCTCAATTAATCTCATAGATAGCACAACTGTATCTCAAACACCATTCAGTAATCGTTCAAAAGAAATTCCAGTACTTAAGCCTGGTGACGGTATCTATGCTTTTGACTTGACATGGGAAGAGATTCAAAGTCTGACTCCATCAATCTTAAACCCTTTCTCAAGATTCACATTGTCCCGAAATCCAAAGTTCCGAAACAGTGGGAAATTTCTAACACTCTCTGAGTTCTTGGCCTTGGCAAAGAATGCAAGCACTCTCTCTGGTGTCTTAATCAACATTGAGAACGCACCCTATCTTGCTAAGGACCAAGGTTTAAGCTTAACTGATGCGGTCCGTAATGCCTTGAGCGAAGCTGGTTATGATAATCAGACAACCCTGAAAGTGATGCTTCAATCCACTGATAGCTCCGTTCTAATAAATTTGAAAAATAAAAATAAAAGTTATGAGCTTGTTTATGAAGTTGATGGGTCAATCAGTGATGTGCTTAATTCAACTGTTGAGGACATCGCGAAGTTTGCTGACTCGGTGGTTGTCAGCAAGACCTCTATCTATCCTGTAAATTTGTTATTCCTCACCGGAGTTACAGATGTTGTAGAGAAGTTGCAATCGTTTAATCTCTCTGTATATGTGCAAACCTTGAGCAATGAGTTTGTCTCTCAAGCATGGGATTTCTTCTCAGACGCAACGGTGGAGATCAACTCATTTTTCGTTGGAGCCAGTGTAGATGGAATCATCACCGACTTTCCAAAGACATCTGCTAGATATAAAAAGAACCGATGCTCTTTTCTGGGCAAGGATGCTCCTACCTACATGAGCCCTGTCGAGCCTGGCAGCTTGTTGAAACAGGTTACTTCCGAGTACTTACCTCCACTGGCCGCTCCCTACCCGGTTCTCGACGACAAAGACGTGGCGGAGTCACCATTACCCCCAATTGCAAGCAGAGTTCCACCACCTGCTGGGGGGAGTGGATCTACAGCAGCACCTCCAACTTCACCCAATGGACAGCCTAAGATTGGAGGAGGCTTCTTCCTCTTAAACTTTTCCTTGCTTATCATTGCTATTCTTCTATTCTGA 2289 40.32 MRNLPTMSLLLLLLLHSFLILVSSQKSNNTSPWQTLTGKAPAVIARGGFSGLFPDSSSYAYSVALSLSVPEVVLWCDVQLTKDGAGICLPDLILDNSTNAGFVFRPNLAKVYLVNGVPVTGLFTVDFNLQDLADNVNLVQGIYSRSNKFDGNGFQILTVEDVAKEFKPPGFWLNIQHDAFFTQHNLSMRNFVITVSRRVIVNYISSPEVGFLTSIAARFKPSTTKLVFLFLGQDDIELTTNQTYGSLLRNLTFIKTFASGIIVPKTYIWPIDKDGYLLSQTSLVSDAHKAQLEVFASEFYNDLPLSYNYSYDPITEYLSYVDNDKFSVDGVLTDFPLTSSQARDCFAHLDKNAKIQDKPLIISKFGASGDYPACTDLAYTKAILDGTEVLDCPVQITKDGIPICLSSINLIDSTTVSQTPFSNRSKEIPVLKPGDGIYAFDLTWEEIQSLTPSILNPFSRFTLSRNPKFRNSGKFLTLSEFLALAKNASTLSGVLINIENAPYLAKDQGLSLTDAVRNALSEAGYDNQTTLKVMLQSTDSSVLINLKNKNKSYELVYEVDGSISDVLNSTVEDIAKFADSVVVSKTSIYPVNLLFLTGVTDVVEKLQSFNLSVYVQTLSNEFVSQAWDFFSDATVEINSFFVGASVDGIITDFPKTSARYKKNRCSFLGKDAPTYMSPVEPGSLLKQVTSEYLPPLAAPYPVLDDKDVAESPLPPIASRVPPPAGGSGSTAAPPTSPNGQPKIGGGFFLLNFSLLIIAILLF 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11981400 11990805 + evm.model.ptg000002l.424 HCH12g1235 556082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1235 762 Gene3D Phosphatidylinositol (PI) phosphodiesterase 40 342 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1235 762 Gene3D Phosphatidylinositol (PI) phosphodiesterase 357 660 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1235 762 MobiDBLite consensus disorder prediction 713 738 - -
HCH12g1235 762 Pfam Glycerophosphoryl diester phosphodiesterase family 76 337 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1235 762 Pfam Glycerophosphoryl diester phosphodiesterase family 366 656 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1235 762 SUPERFAMILY PLC-like phosphodiesterases 40 343 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1235 762 CDD GDPD_SHV3_repeat_2 359 660 - -
HCH12g1235 762 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 9 723 - GO:0008889(PANTHER)
HCH12g1235 762 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 39 342 - -
HCH12g1235 762 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 357 661 - -
HCH12g1235 762 SUPERFAMILY PLC-like phosphodiesterases 357 660 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1235 762 CDD GDPD_SHV3_repeat_1 41 342 - -
HCH12g1235 762 ProSiteProfiles GP-PDE domain profile. 41 343 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1235 762 ProSiteProfiles GP-PDE domain profile. 359 661 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1235 HCH-Chr12:11981400 HCH14g0546 HCH-Chr14:34381414 4.30E-171 dispersed
HCH12g1235 HCH-Chr12:11981400 HCH12g1236 HCH-Chr12:12024364 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1235 - - - 0.0