Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1236 ATGAGTTACCAAAGAAACTTTCCGGCGAGAATATTTATCTCGCACACACTCGTCGTTCTATTTCCACTGCTTCTTCATCTTCACTTGAATGTGGTGTTTGTCTCTTCTGAGGATTCTAATAACACCATTCCATGGAAGACTTTAAGTGGAAATCCTCCTCTTGTTGTAGCGCGTGGTGGATTTTCAGGGCTGTTTCCTGATTCAAGCTCTTATGCTTATAGTATAGCATTATTGGTTAGTGTTCCTGATGTGATCTTATGGTGCGATGTTCAATTAACTAAAGATGGCGTTGGAATTTGTATTCCAGATCTTATACTTGACAATTCTACTAACGCCCCAAACGTTCTTGCTGGAAATCTCCCCAAAACCTATCTTGTTAATGGCGTCCCTAATACGGGATTCTTTACCATTGATTTCAATCTCCAAGATCTTTCATTTGTTAGGCTTGTTCAAGGCAACCATGATCGATCTTATAGGTTTGATGGCCATGGGTTTCCAATTCTAACTGTTAAAGATGTGGCTGAGGAATTCAAGCCACCGGGATTTTGGCTGAATATTCAGCATGATGCGTTCTTCACGCAACACAATTTGAGCATGAGAAACTTTGTAATTAATGCATCCAGAAGCGTCATTATTAATTATATTTCATCACCAGAGGTGGGATTTCTGACAAGTATAGCAGCAAGATTTAAACGCAGCACAACGAAGCTGGTCTTTCGGTTTTTAGGCCAAGATGATATTGAGCTCACTACAAATCAAACTTATGGTTCTCTTCTGAGAAATCTCACCTTTACTAAGACATTTGCTTCTGGAATTCTTGTGCCCAAGACTTACATATGGCCTATTGATAAAGATGGTTACCTACTATCTCAGAGCTCTCTCGTTTCTGATGCTCATAAAGCACAGTTAGAAGTTTTTGCATCGGAGTTCTATAATGACCTTCCATTGAGCTACAACTACAGTTACGATCCAATTACGGAGTACCTGTCTTACATAGAAAATGATAAATTTTCAGTTGATGGTGTGTTGACTGATTTCCCTATTACTCCATCGACAGCCATAGATTGTTTTGCTCATCTGGATAAGAATGCGAAAATTCAAGATAAGCCTTTGGTAATTTCAAAATTTGGAGCTAGTGGAGACTATCCTGCATGTACTGACTTGTCGTATACCAAGGCTATTTTAGATGGTACAGAAGTGCTAGACTGTCCTGTTCAAATAACTAAGGATGGGATACCTATTTGCTTAAGCTCAATTAATCTCATAGATAGCACAACAGTATCTCAAACACCATTCAGTAGTCGTTCAAAAGAAATTCCAGAAATTAAGTCTGGTGACGGTATCTTTGCTTTTGACTTGACATGGGAAGAGATTCAAAGCCTGACTCCGTCAATCTTAAACCCTTTCTCAAGATTCACATTGTCCCGAAATCCAAAGTTCCGAAACAGTGGGAAATTTCTAACACTCTCTGAGTTCTTGGCCTTGGCAAAGAATGCAAGCACACTTTCTGGTGTCTTAATCAACATTGAGTATGCACCCTATCTTGCTAAGGACCAAGGTTTAAGCTTAACTGATGCGGTCCGTAATGCCTTGAGCGAAGCTGGTTATGATAATCAGACAACCCTGAAAGTGATGCTTCAATCCACAGATAGCTCCGTTCTAATAAATTTGAAAAATAAAAATAAAAGTTATGAGCTTGTTTATGAAGTTGATGAGTCAATCAGTGATGTGCTTAATTCAACTGTTGAGGACATCACGAAGTTTGCTGACTCTATGGTTGTCAGCAAGACCTCTATCTATCCTTTAAATTTGTTATTCCTCACTGGAGCTACAAATGTTGTACCGAAGCTGCAATCGTTTAATCTCTCTGTATATGTGCAAACCTTGAGCAACGAGTTTGTCTCTCAAGCATGGGATTTCTTCTCAGACGCAACAGTGGAGATCAACTCATTTTTCATGGGAGCCAATGTAGATGGAATCATCACTGACTTTCCAAAGACATCTGCTAGATATAAAAAGAATCGATGCTTTAATCAGGGCAAGGATGTACCTAACTACATGAGCCCTGTCGAGCCTGGCAGCTTGTTCAAACTCATTACTGCCGAGTACTTACCTCCACAGGCCTCTCCCAACCCAATTCTGGATGACAAAGATGTGGTGGAGTCACCATTACCGACAGTTGCAACTCCACCACCTGCTGGGGGAGGTAGTTCTACAGCAGTACCTCCAACTCCACCCAATGGACAGCCTAATATTGCAGGAGGCTTCTTCCTCTTAAACTTTTCCTTGCTTATCATTGCTCTTTTTCTACTCTGA 2316 40.33 MSYQRNFPARIFISHTLVVLFPLLLHLHLNVVFVSSEDSNNTIPWKTLSGNPPLVVARGGFSGLFPDSSSYAYSIALLVSVPDVILWCDVQLTKDGVGICIPDLILDNSTNAPNVLAGNLPKTYLVNGVPNTGFFTIDFNLQDLSFVRLVQGNHDRSYRFDGHGFPILTVKDVAEEFKPPGFWLNIQHDAFFTQHNLSMRNFVINASRSVIINYISSPEVGFLTSIAARFKRSTTKLVFRFLGQDDIELTTNQTYGSLLRNLTFTKTFASGILVPKTYIWPIDKDGYLLSQSSLVSDAHKAQLEVFASEFYNDLPLSYNYSYDPITEYLSYIENDKFSVDGVLTDFPITPSTAIDCFAHLDKNAKIQDKPLVISKFGASGDYPACTDLSYTKAILDGTEVLDCPVQITKDGIPICLSSINLIDSTTVSQTPFSSRSKEIPEIKSGDGIFAFDLTWEEIQSLTPSILNPFSRFTLSRNPKFRNSGKFLTLSEFLALAKNASTLSGVLINIEYAPYLAKDQGLSLTDAVRNALSEAGYDNQTTLKVMLQSTDSSVLINLKNKNKSYELVYEVDESISDVLNSTVEDITKFADSMVVSKTSIYPLNLLFLTGATNVVPKLQSFNLSVYVQTLSNEFVSQAWDFFSDATVEINSFFMGANVDGIITDFPKTSARYKKNRCFNQGKDVPNYMSPVEPGSLFKLITAEYLPPQASPNPILDDKDVVESPLPTVATPPPAGGGSSTAVPPTPPNGQPNIAGGFFLLNFSLLIIALFLL 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12024364 12034815 + evm.model.ptg000002l.423 HCH12g1236 556083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1236 771 MobiDBLite consensus disorder prediction 725 747 - -
HCH12g1236 771 CDD GDPD_SHV3_repeat_1 53 353 - -
HCH12g1236 771 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 51 353 - -
HCH12g1236 771 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 368 672 - -
HCH12g1236 771 SUPERFAMILY PLC-like phosphodiesterases 51 351 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1236 771 MobiDBLite consensus disorder prediction 722 747 - -
HCH12g1236 771 Gene3D Phosphatidylinositol (PI) phosphodiesterase 368 671 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1236 771 Gene3D Phosphatidylinositol (PI) phosphodiesterase 52 352 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1236 771 SUPERFAMILY PLC-like phosphodiesterases 368 671 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1236 771 ProSiteProfiles GP-PDE domain profile. 370 672 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1236 771 ProSiteProfiles GP-PDE domain profile. 53 354 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1236 771 Pfam Glycerophosphoryl diester phosphodiesterase family 88 348 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1236 771 Pfam Glycerophosphoryl diester phosphodiesterase family 377 667 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
HCH12g1236 771 CDD GDPD_SHV3_repeat_2 370 671 - -
HCH12g1236 771 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 24 733 - GO:0008889(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1236 HCH-Chr12:12024364 HCH14g0546 HCH-Chr14:34381414 3.00E-172 dispersed
HCH12g1235 HCH-Chr12:11981400 HCH12g1236 HCH-Chr12:12024364 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1236 - - - 0.0