Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1237 ATGCCTGAAACTGAAACAGAGACTCATCACCACTGTGTTGTAAAAGAACCACGCCTGGTGGCCAGAAAGTTTCTGGCCAGGCCTCAGCATGAAGGCTTAGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTAAAATACTTTGACCCTTTCCTGGTTTTGGATGAATTTTCAGTTACTGCACCAGCTGGATTCCCAGACCATCCACATAGAGGCTTTGAGACAGTGACTTACATGTTACAGGGAAGTGTGAGACATGAAGATTTTGAAGGACATAAGGGAACAATAGCTGCAGGTGACTTGCAATGGATGACTGCAGGAAGAGGGATTGTTCATTCAGAGATGCCAGCAGCTCAGGGTACCCAAAAGGGCCTACAGCTATGGATTAACCTCTCTTCCAAACACAAAATGATTGAACCAAATTACCAAGAAGTACCCAGCAAGGAAATTCCAGAAGCTACAAAAGATGGAGTCAGAGTTAAAGTTATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTATCTAGACTTCACTCTGAAGCCGAAAACTCACCTTCAACAGCCGATACCGTCATCCTGGAATGCATTTGTCTATGTTTTAGAAGGCGAGGGCATCTTCGGTAGTTCAAAATCGTCGCCCACGACAGCGCATAACCTTCTTCTCCTAGGATTTGGGGATGGTCTAGAGGCCTGGAACAAGTCTTCAAATCCTCTCAGGTTCATTTTAATAGGAGGTGAACCATTGAGTGAGCCTCTTGTGCAATTTGGACCATTTGTTATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAACTATACCAATGGATTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGCTCTTAGTCTTGGTTTCTAA 918 43.9 MPETETETHHHCVVKEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVRHEDFEGHKGTIAAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKHKMIEPNYQEVPSKEIPEATKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKTHLQQPIPSSWNAFVYVLEGEGIFGSSKSSPTTAHNLLLLGFGDGLEAWNKSSNPLRFILIGGEPLSEPLVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAALSLGF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12052770 12055081 + evm.model.ptg000002l.422 HCH12g1237 556084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1237 305 Gene3D Jelly Rolls 31 283 IPR014710 -
HCH12g1237 305 Pfam Pirin C-terminal cupin domain 183 287 IPR008778 -
HCH12g1237 305 CDD cupin_pirin_N 37 132 - -
HCH12g1237 305 PIRSF Pirin 16 296 IPR012093 -
HCH12g1237 305 FunFam pirin 31 168 - -
HCH12g1237 305 Gene3D Jelly Rolls 152 257 IPR014710 -
HCH12g1237 305 Pfam Pirin 37 130 IPR003829 -
HCH12g1237 305 SUPERFAMILY RmlC-like cupins 18 297 IPR011051 -
HCH12g1237 305 PANTHER PIRIN-RELATED 11 298 IPR012093 -
HCH12g1237 305 CDD cupin_pirin_C 180 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1237 HCH-Chr12:12052770 HCH6g0848 HCH-Chr6:43257759 6.00E-148 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1237 K06911 - csv:101216351 557.37