Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1253 ATGAGAGGGAGGAGAAGTTTGTATTGTTTTGGTGTTGTTTTCGTTGTTATTTTAATATCAAACATATTGAGTGGGGTTGAAACCGCGAGTAGAAGAGACGAGTTCGATGGTAAAAAAGGATCCATGATTAGTTGGAATGATTTGGAAGTAGATGAGCATCAACGCCAAGCTTTGATTTCCAAAAACCGTGATGAAAATTCTCGAATCATTGTGGTTGACAAGAATGGGACTGGCGATTCTCGTACTGTTCAAGGAGCCGTGGATATGGTTCCTCTTCGTAATAAACAAAGGGTCAAGATTTTCATTCTTCCTGGAATTTACAGAGAGAAGGTATTTATACCAAGCACCAAGCCCTATATTTCATTCATTGGGGATAAGGGACGAGTTTCAGACACTGTTATCACATGGAACGACAAAGCTTCTGATATAGATATTCATGGACATGAAGTCGGAACATATGGAACCGCCACGGTTGCCATTGAATCCGACTACTTTTGTGCTACTGAAATCACTTTTGAGAACTCAATTGATGCAAAGCCCGGAGATAGTGGAAGGCAAGCAGTAGCTCTAAGAATTTCAGGAAACAAAGCCATGTTTTACAAAGCTACATTTATAGGAAAACAAGACACGCTCTTAGACGACGCAGGATCCCACTATTTCTACCAATGTCACATCCAAGGAAGCATTGATTTCATATTTGGCCAAGCTAAATCCCTTTATAAGCAATGTGTCATAACTTCCACGGCGGAGAATTATGGAGCAATCGCGGCGCACCATCGTGAATCGGCGGACGAAGACACCGGGTTCTCATTCGTCCGGTGCATAATAAGTGGAACAGGCAAGATTCTACTGGGAAGAGCATGGGGAAGTCATTCAAGAACAATATATTCTCAGTGTCATATTGAAGATATGATAACTCCAGAAGGATGGAGCGATATGAATGACCCATCAAAACAAAGGACAGCAGTTTTTGGGGAGTATAATTGTAGTGGAAGTGGAGCGAATACAAAAGGGCGGGTGCCATGGATGAAGAATCTTAGCTATGAGGACGTCAGACCTTTTCTTGATATGAAATTCATTGATGGACAACAATGGCTGGATTTATGA 1107 41.55 MRGRRSLYCFGVVFVVILISNILSGVETASRRDEFDGKKGSMISWNDLEVDEHQRQALISKNRDENSRIIVVDKNGTGDSRTVQGAVDMVPLRNKQRVKIFILPGIYREKVFIPSTKPYISFIGDKGRVSDTVITWNDKASDIDIHGHEVGTYGTATVAIESDYFCATEITFENSIDAKPGDSGRQAVALRISGNKAMFYKATFIGKQDTLLDDAGSHYFYQCHIQGSIDFIFGQAKSLYKQCVITSTAENYGAIAAHHRESADEDTGFSFVRCIISGTGKILLGRAWGSHSRTIYSQCHIEDMITPEGWSDMNDPSKQRTAVFGEYNCSGSGANTKGRVPWMKNLSYEDVRPFLDMKFIDGQQWLDL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12939272 12941689 + evm.model.ptg000002l.406 HCH12g1253 556100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1253 368 ProSitePatterns Pectinesterase signature 2. 225 234 IPR033131 -
HCH12g1253 368 Gene3D - 64 368 IPR012334 -
HCH12g1253 368 Pfam Pectinesterase 70 362 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH12g1253 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 47 367 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
HCH12g1253 368 SUPERFAMILY Pectin lyase-like 67 367 IPR011050 -
HCH12g1253 368 FunFam Pectinesterase 65 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1253 HCH-Chr12:12939272 HCH1g0389 HCH-Chr1:51756649 3.80E-157 dispersed
HCH12g1253 HCH-Chr12:12939272 HCH4g1103 HCH-Chr4:7208766 1.50E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1253 K01051 - csv:101209316 498.049