Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g1264 | ATGGCTAGCAGAGAAGCAAGAGAACCATTGTTATCGATTTCAATTAATACTCCTGGAACTAGATTTCTAGATGGTTCAAGAAGCAGAAGAAGATTGAGGCGCTCTAAGAGTGCTCCTCTTGTAGATTCTCCTCATATAGGGTCCGCTGGCACTGGCGCTGATTCAATGTCACGCGCAGGATCGGTATTTGGAAAGCTACACCCAAGTTTTAGAAGAGTGGCCTTATTTTTAACCATTTACTTGGGTATAGGAACTGTTTGTTTTTACCTTGTCAGAAACAAAATCAAAGGGGGGAAAACAGATGGAATAATTGATGCTGTTTATTTCACTATTGTGACAATGACAACAGTTGGATATGGAGATCTTGTCCCAGACAGTGCCTCGACAAAGCTACTAGCTTGTGCTTTTGTCTTTTCAGGGATGGCTCTTGTTGGTCTAATACTAAGCGAAGCCGCCGACTATTTGGTCGAAAAGCAGGAAATATTGCTGTTTAAAGCCTTGCATACAGACGAAAACGTCGGTTCTTTTGATCTAACGAAAGAACTCGATACCAAGAAAGCTAAATACAAGTGCTTAGTGGTGTTCCTCATCCTTCTGGTGCTCATCATCTCTGGGACTGCCTTTCTGATTACCATTGAGAAGTTGGATTTCATCGATGCATTTTATTGTGTATGTTCTACCATCACAACCTTAGGATATGGAGACAAAAGCTTCTCAACTACATGGGGGCGTATCGTTGCCATTTTCTGGATTTTGATCAGTACCATTACTTTGGCTCAATTCTTCCTTTACATTGCTGAGCTAAACTCTGAAAGAAGACAAAGGTCATTGGTTCAGTGGGTTTTGAGTAGAAGGGTGACAAGCTTAGACCTCGAGGCTGCAGATCTTGATGACGACGGGGTTGTTGGGGCTGCGGAGTTTGTGATACACAAGCTTAAAGAGATGGGGAAAATTAACCAAGATGATATTTCACTTGTGCTGGAGCAGTTTGAGAATCTTGATGTTGATCAATCAGGAACCTTGACCACATCTGATATAACACTTGCTCAATCACCTTGA | 1059 | 41.93 | MASREAREPLLSISINTPGTRFLDGSRSRRRLRRSKSAPLVDSPHIGSAGTGADSMSRAGSVFGKLHPSFRRVALFLTIYLGIGTVCFYLVRNKIKGGKTDGIIDAVYFTIVTMTTVGYGDLVPDSASTKLLACAFVFSGMALVGLILSEAADYLVEKQEILLFKALHTDENVGSFDLTKELDTKKAKYKCLVVFLILLVLIISGTAFLITIEKLDFIDAFYCVCSTITTLGYGDKSFSTTWGRIVAIFWILISTITLAQFFLYIAELNSERRQRSLVQWVLSRRVTSLDLEAADLDDDGVVGAAEFVIHKLKEMGKINQDDISLVLEQFENLDVDQSGTLTTSDITLAQSP | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 13560885 | 13562139 | + | evm.model.ptg000002l.395 | HCH12g1264 | 556111 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g1264 | 352 | SUPERFAMILY | Voltage-gated potassium channels | 66 | 160 | - | - | |
| HCH12g1264 | 352 | MobiDBLite | consensus disorder prediction | 24 | 54 | - | - | |
| HCH12g1264 | 352 | ProSitePatterns | EF-hand calcium-binding domain. | 295 | 307 | IPR018247 | - | |
| HCH12g1264 | 352 | SUPERFAMILY | EF-hand | 280 | 347 | IPR011992 | - | |
| HCH12g1264 | 352 | PRINTS | Two pore domain K+ channel signature | 112 | 140 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
| HCH12g1264 | 352 | PRINTS | Two pore domain K+ channel signature | 229 | 238 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
| HCH12g1264 | 352 | SUPERFAMILY | Voltage-gated potassium channels | 184 | 289 | - | - | |
| HCH12g1264 | 352 | FunFam | Calcium-activated outward-rectifying potassium channel 1 | 67 | 162 | - | - | |
| HCH12g1264 | 352 | Gene3D | - | 67 | 161 | - | - | |
| HCH12g1264 | 352 | Pfam | Ion channel | 76 | 156 | IPR013099 | - | |
| HCH12g1264 | 352 | Pfam | Ion channel | 197 | 268 | IPR013099 | - | |
| HCH12g1264 | 352 | Gene3D | - | 175 | 287 | - | - | |
| HCH12g1264 | 352 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 75 | 284 | IPR003280 | GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g1264 | HCH-Chr12:13560885 | HCH3g1019 | HCH-Chr3:13636353 | 4.60E-99 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g1264 | K05389 | - | csv:101216032 | 489.189 |