Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1317 ATGATTCATTCCGGTTTATTGCTTTTGGGTCCATTGAGTAATTCGGATACAACGACTTCTTTGATACCGGAGTCGGTTTTGGAAGAAGACGGTGTGGCTGCTGATATTAGAAGTGAGACTTCTGTTTCCCTCCCTGCTTCTTTCTGGGTTAGAATAGCTATGAGAGTATCGAGAACTAAATGGTTCATTTTGTTAAGAAGAGTATTTCACTACCAGAATGGATCAAGATCTGATCTTGGGCCTAATCCTTTCAATTCTAGCTCATGGATGGTGATGGAACTAGTAGCTTTGTTGCTTCAGCTGATTATCTCAGTATTTACCTTTGTCATTTCAGAGACTGAGAGGCCAATTTGGCCTATGAGATTTTGGATAGGTGGTTATGATCTTGGATGTGCCCTTAATCTACTGCTTCTCTATGGCCGGTATCGGCACGTTTACTTAATGCAGGAAGATGGTAACAGCCTCTCTGATGTTGAACAGGAAAGGAGCAGTGAATCCTCAAGGACGTTGCATTTGATAAACAAATGCCGGATGTCTCTCGACCTCATGTTTGCAATTTGGTTTATAATGGGTAATATATGGGTCTTTGATTCTCGTTTTGGTTCTTTCCGAAGAGCTCCCAAGCTACATCAATTATGCATCTTCCTGTTAGTTTGGAATGCTATCTGCTACTCTTTTCCATTTATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCGTTGATCAGCAGCCTTACAGGATATAACATGATCATGGGGTCAATTGAAAAAGGAGCATCTCATGATCAAATTTCCCAGCTACCTTACTGGAGATATAAAGCAGTTGATCTTGATTTAGAGCTTGGAAACCATCAGGAATGTTGTATTTGCCTTGCAAAGTACAGAGACAAGGAAGAAGTGAGACAGTTGCCCTGTTCCCATGTGTTTCATCTCAAGTGTGTGGATAAGTGGCTGGCAATTACATCTTCCTGCCCTCTCTGTAAACAACAACTTCAAAGATAG 999 41.34 MIHSGLLLLGPLSNSDTTTSLIPESVLEEDGVAADIRSETSVSLPASFWVRIAMRVSRTKWFILLRRVFHYQNGSRSDLGPNPFNSSSWMVMELVALLLQLIISVFTFVISETERPIWPMRFWIGGYDLGCALNLLLLYGRYRHVYLMQEDGNSLSDVEQERSSESSRTLHLINKCRMSLDLMFAIWFIMGNIWVFDSRFGSFRRAPKLHQLCIFLLVWNAICYSFPFILFLLLCCCVPLISSLTGYNMIMGSIEKGASHDQISQLPYWRYKAVDLDLELGNHQECCICLAKYRDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLCKQQLQR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26209122 26210636 + evm.model.ptg000002l.342 HCH12g1317 556164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1317 332 SUPERFAMILY RING/U-box 276 330 - -
HCH12g1317 332 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 44 331 - -
HCH12g1317 332 SMART ring_2 286 326 IPR001841 -
HCH12g1317 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 331 IPR013083 -
HCH12g1317 332 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
HCH12g1317 332 Pfam Ring finger domain 284 327 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1317 HCH-Chr12:26209122 HCH4g0398 HCH-Chr4:2590064 7.20E-46 dispersed
HCH12g1317 HCH-Chr12:26209122 HCH12g1319 HCH-Chr12:26265777 6.40E-135 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1317 - - - 0.0