Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1319 ATGATTAATTCTTGTTATTTTCTTTCGGGTCCGTCTTCGTCGTGTAATTGCAGTACTACTACTACTAGTAGTTCCTTTAACTCGAATTCTGAGGCTGAAGAAGATGGTGAAGTTTCTACTATTAGAACCAACAATTCTGCGGCTGTCTCGGCTTCTTTCTGGGTTAGGACGGTGATGAGAATGTCTAGAGCTAGGTGGTTTGTTTTCTTAAGAAGAGTGTTCCATTACCAGAATGGTTCAAGGTCTGATCTTGGGTCTGATCCTTTCAATTCTAGCTCATGGATGCTGATGGAGCTATTAGTTGTAGTGTTTCAGCTTGCCATCTCAGTGTATGTTCTTGCCATTTCGAAGATCGAGAGGCCGATTTGGCCTATGAGACTATGGATTGTTGGTTACAATCTTGGCTGCGCACTTAGTTTGTTGCTTCTCTATGGACGCTATTGGCATCTTCATCTAATGCGAGGAGACGGTGTCAGCCTTTCCAATGCTGAGCAACAGAGGAGCAGTGAAGTATCAAGGACCTTGCATTTGCTGAACAAATGTCGGACTTCTCTCGAACTCTTCTTTGCAATATGGTTTGTAATGGGTAATGTTTGGGTCGTTGATTCGAGATTTGGTTCTTTCGAAAGAGCTCCCAAACTCCATCTGTTATGCATCTTCCTGCTAGCTTGGAATGCTTTCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTTTAGGGTATAACATGAACATGGGGTCAATGAATAAAGGAGCATCTGTCGATGAAATTTCTCTCCTACCTAGCTGGAGATATAAAGCAGTTGAGGTCAATCCATCACTTGGAAGTCAACCTGATTGCAATAAAGTACTTCCAAAAGAGGATCCAGAATGCTGTATTTGCCTTGCCAAGTACAGAGATAAGGAAGAAGTGAGAGAGTTGCCTTGTTCCCATATTTTTCATCTAAAGTGTGTAGATAAGTGGCTAGCAATTATATCTTCATGTCCTCTGTGTAAACAACAACTTTAA 1041 41.69 MINSCYFLSGPSSSCNCSTTTTSSSFNSNSEAEEDGEVSTIRTNNSAAVSASFWVRTVMRMSRARWFVFLRRVFHYQNGSRSDLGSDPFNSSSWMLMELLVVVFQLAISVYVLAISKIERPIWPMRLWIVGYNLGCALSLLLLYGRYWHLHLMRGDGVSLSNAEQQRSSEVSRTLHLLNKCRTSLELFFAIWFVMGNVWVVDSRFGSFERAPKLHLLCIFLLAWNAFCYSFPFILFLLLCCCVPLISSLLGYNMNMGSMNKGASVDEISLLPSWRYKAVEVNPSLGSQPDCNKVLPKEDPECCICLAKYRDKEEVRELPCSHIFHLKCVDKWLAIISSCPLCKQQL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26265777 26267461 + evm.model.ptg000002l.340 HCH12g1319 556166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1319 346 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
HCH12g1319 346 SMART ring_2 302 342 IPR001841 -
HCH12g1319 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 346 IPR013083 -
HCH12g1319 346 Pfam Ring finger domain 301 343 IPR001841 -
HCH12g1319 346 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 19 345 - -
HCH12g1319 346 SUPERFAMILY RING/U-box 295 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1319 HCH-Chr12:26265777 HCH4g0398 HCH-Chr4:2590064 1.20E-48 dispersed
HCH12g1317 HCH-Chr12:26209122 HCH12g1319 HCH-Chr12:26265777 6.40E-135 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1319 - - - 0.0