Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1332 ATGCCTGCAACTCTAAGGCATCTCTTTTTTTCTCCTCATTTCTTCTCAATAGCCTTACTTTTTTCAATAAACTCTCTTCTCTTTTCTTGTTGCTACTCCATTGATGAACAAGGTAAAACTCTTTTAGCATGGAAGAACAATTTGACCAGCACCACAGATGCACTCAAGTCATGGAATTCTGTAGACCAAAGTCCATGTTTTTGGTTTGGAGTTCTTTGCAACTCAAAGGGAGAAGTAGTACAAATAAGCTTGAAAGCAGTAGATTTGCAAGGTACTTTGCCTTCAAATTTTCAGACTCTCAAGTTCTTGAAGACCCTCATCCTCTCTTCAACCAATATTACAGGAACCATTCCAAAGGAATTTGGAGAGTATAACGAACTCAGTTTTATCGATCTTAGTGACAATTACCTCTCGGGTGAAATCCCGAGAGATATTTGTAAGCTAAGCAAGCTGCAAAGTTTGTATCTTCATACCAACTCTTTTGAAGGACTTATACCTTTAGAGATTAGAAATCTTTCAAATCTTGTGCATCTTACATTCTATGACAACCAACTGAGTGGTGAAATTCCGAAAAGCATTGGTGGATTGAAAAAGCTACAAGTTTTTAGAGCTGGAGGTAACAAAAATCTGAAGGGTGAGTTGCCGTTGGAGATTGGAAACTGCACAAGTTTAGTCATGTTAGGCCTAGCTGAAACGGGAATCTCTGGAACTCTTCCTTCTTCGATCGGAATTCTGAAGAGAATTCAAACTATAGCCATCTATTCTTCCTTCCTTTCAGGTCCAATTCCAGAAGAGATTGGAAACTGTGGTGAGTTACAGAGTCTATACCTGTTTCAGAATGCTATTTCCGGGTCAATACCAAGACGAATTGGAGAGCTGGGAAAGCTTCAAAGTGTTCTTTTATGGCAGAACAGCTTGGTGGGTGGAATTCCTGATGAATTTGGAAACTGCAAGGAGCTCATGGTCATTGACTTGTCAGAAAATCTTCTAACTGGAACCATACCAATAAGTCTTGGAGAGCTTACAAATCTTCAAGAGCTTCAACTGAGTGTTAATCAGCTTTCTGGTACAATACCTCTTGAAATCTTTAATTGTTTGGCTTTGTCTCATCTGGAAGTTGACAACAATGGCCTTTCAGGAGAGATACCGCCTATTATTGGCAACTTGAAGAACTTGACTATATTTTTGGCCTGGAAGAATAATCTACAAGGAAGTATTCCAAATAGTCTCTCAGACTGCCAGAATCTCCAGGCTCTTGATCTCTCCTATAACAACTTAATTGGTCCAATACCGAAACAGATTTTCGGGTTGAAGAATCTTACTAAAGTTCTTCTACTTTCCAATAATCTGTCTGGATTTATTCCACCCGATATAGGAAACTGTACAAATCTGTACAGGCTAAGACTAAATGGGAATAGGATTGGAGGTACTATTCCATCAGAGATTGGAAATTTGCAGAACTTAAATTTTGCTGACATGAGTGAAAACCTTCTTGTCGGAGGAATTCCTCCATCCTTATCAGAATGCGATAGTCTCGAGTTTCTTGATCTTCATTCAAATGAGCTCACTGGTTCTTTGCCACTTAATCTGCCAAAGAGCCTCCAGTTTTTGGATATATCTAACAACAGACTTAATGGTCAGATAAGTCATGGCATTGGAGGATTGAGTGAACTAACAAAACTCGACCTGGGAAACAATCAACTATCTGGCAAAATCCCAGCAGAAATCCTTTCCTGCAAGAAGCTGCAATTTCTGGACCTTGGAAACAATGGCTTCTCTGGGGAAATCCCAGATGAACTGGGTCAAATTACTTCACTTGAAATCGCTCTCAATCTAAGTTGCAATCAACTTTCAGGTGAAATCCCGTCCCAATTTTCTGGTCTTACCAAGCTCGGAACTCTCGACCTCTCCCACAACAAGCTATCAGGAAACCTCATCCCTCTTGCAAAACTTCAAAACCTTGTCTCCCTAAACATCTCCTTCAACGACTTCTCTGGCGAATTACCCAACACACCCTTCTTTCAGAGAATCCCTCTCAGCGACATAGCCGGAAACAAAGATCTCTACATTCCATATGGGCTGCAAACTTCTACTAACAATTTACCATCCAACACCCAAAGCAGATCAGCCATGAAGATAGCTATGCCAATTCTCATCAGTGCCAGTACAGTACTAATCCTGCTAGCTATCTATGTACTAATCCGAACACACATGGCAAATAGTCGCCTTCTCACTGAAGGCGAAAACTGGGAGATCACTTTATATCAAAAACTCGACTTTTTAATTGACGACGTAGTCAAGAACTTAACTTCATCCAATGTGATAGGCACTGGAAGCTCAGGAGTAGTCTATAGAGTAACAACTCCAAATGGAGAAACAATGGCAGTGAAGAAAATGTGGTCATCTGAAGAATCAGGAGCCTTCAATTCTGAAATCCAAACTCTAAGTTCAATTCGACACAAGAATATAATCAGATTACTGGGTTGGGGATCAAACCAGAATCTGAAGTTACTGTTTTATGATTATCTTCCAAATGGAAGCTTGAGCTCATTACTCCATGGAGCTGGAAAAGGTGTAGCAGAATGGGAGACAAGATACGATGTCGTTTTGGGAGTGGCACATGCTCTTGCATATCTTCACCATGATTGTCTTCCTCCAATATTACATGGAGATGTAAAAGCCATGAATGTTTTGATTGGTCATGGCTTTCAACCTCACCTTGCTGACTTTGGATTGGCTAGAATCGTCAGTTTAAACAATGAGTTTGATTCTGGGAAGCCATCTCAGAGACCTCATCTTGCTGGTTCTTATGGTTACATGGCTCCTGAGCATGGATCGATGCAGCGAATAACAGAGAAAAGTGACGTTTATAGCTTTGGAGTCGTGATATTAGAGGTTCTCACCGGCCGGCATCCGCTAGACCCGACGCTGGCCGGGGGAGCCCATTTGGTTCAATGGGTTCGCGATCACTTAGCAAGTAAGAGAAACCCAGTTGCCATTTTTGACCCAAAGCTCAGAGGAAGAGCTGATCCCGCCATGCATGAAATGCTTCAAACCCTCGCCGTTGCTTTGCTCTGTATCAGTATCAAGCCCGATGATCGTCCCATGATGAAAGATGTCGTTGCTATGCTTAAGGAAATTCGACATCTCGAATCTGCCAGACCTCATTCTGATATTCCTAAGCCTGGAATGACCGCGGTTCAGTCGCCATCGCCGTCGCCGCCGCCGACGACGATGACGAGGAAATTTGTTTCACAAGGGTCTTCTAATTGCTCCTTTGCCTTCTCTGATGATTCCATTTAA 3303 41.72 MPATLRHLFFSPHFFSIALLFSINSLLFSCCYSIDEQGKTLLAWKNNLTSTTDALKSWNSVDQSPCFWFGVLCNSKGEVVQISLKAVDLQGTLPSNFQTLKFLKTLILSSTNITGTIPKEFGEYNELSFIDLSDNYLSGEIPRDICKLSKLQSLYLHTNSFEGLIPLEIRNLSNLVHLTFYDNQLSGEIPKSIGGLKKLQVFRAGGNKNLKGELPLEIGNCTSLVMLGLAETGISGTLPSSIGILKRIQTIAIYSSFLSGPIPEEIGNCGELQSLYLFQNAISGSIPRRIGELGKLQSVLLWQNSLVGGIPDEFGNCKELMVIDLSENLLTGTIPISLGELTNLQELQLSVNQLSGTIPLEIFNCLALSHLEVDNNGLSGEIPPIIGNLKNLTIFLAWKNNLQGSIPNSLSDCQNLQALDLSYNNLIGPIPKQIFGLKNLTKVLLLSNNLSGFIPPDIGNCTNLYRLRLNGNRIGGTIPSEIGNLQNLNFADMSENLLVGGIPPSLSECDSLEFLDLHSNELTGSLPLNLPKSLQFLDISNNRLNGQISHGIGGLSELTKLDLGNNQLSGKIPAEILSCKKLQFLDLGNNGFSGEIPDELGQITSLEIALNLSCNQLSGEIPSQFSGLTKLGTLDLSHNKLSGNLIPLAKLQNLVSLNISFNDFSGELPNTPFFQRIPLSDIAGNKDLYIPYGLQTSTNNLPSNTQSRSAMKIAMPILISASTVLILLAIYVLIRTHMANSRLLTEGENWEITLYQKLDFLIDDVVKNLTSSNVIGTGSSGVVYRVTTPNGETMAVKKMWSSEESGAFNSEIQTLSSIRHKNIIRLLGWGSNQNLKLLFYDYLPNGSLSSLLHGAGKGVAEWETRYDVVLGVAHALAYLHHDCLPPILHGDVKAMNVLIGHGFQPHLADFGLARIVSLNNEFDSGKPSQRPHLAGSYGYMAPEHGSMQRITEKSDVYSFGVVILEVLTGRHPLDPTLAGGAHLVQWVRDHLASKRNPVAIFDPKLRGRADPAMHEMLQTLAVALLCISIKPDDRPMMKDVVAMLKEIRHLESARPHSDIPKPGMTAVQSPSPSPPPTTMTRKFVSQGSSNCSFAFSDDSI 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29763757 29767216 + evm.model.ptg000002l.327 HCH12g1332 556179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1332 1100 Gene3D Ribonuclease Inhibitor 145 224 IPR032675 -
HCH12g1332 1100 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
HCH12g1332 1100 FunFam Putative LRR receptor-like serine/threonine-protein kinase 754 842 - -
HCH12g1332 1100 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 198 1048 IPR050647 -
HCH12g1332 1100 Pfam Leucine Rich Repeat 103 122 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine Rich Repeat 463 485 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine Rich Repeat 174 196 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine Rich Repeat 610 628 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine Rich Repeat 415 437 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine Rich Repeat 368 389 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine Rich Repeat 511 530 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524(InterPro)
HCH12g1332 1100 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1061 - -
HCH12g1332 1100 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 FunFam Putative LRR receptor-like serine/threonine-protein kinase 609 693 - -
HCH12g1332 1100 CDD STKc_IRAK 775 1047 - -
HCH12g1332 1100 FunFam Leucine-rich receptor-like protein kinase family protein 34 191 - -
HCH12g1332 1100 SUPERFAMILY Protein kinase-like (PK-like) 761 1044 IPR011009 -
HCH12g1332 1100 MobiDBLite consensus disorder prediction 1053 1089 - -
HCH12g1332 1100 FunFam Leucine-rich receptor-like protein kinase family protein 336 608 - -
HCH12g1332 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1332 1100 SMART serkin_6 769 1017 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1332 1100 Gene3D Ribonuclease Inhibitor 430 531 IPR032675 -
HCH12g1332 1100 Gene3D Ribonuclease Inhibitor 334 429 IPR032675 -
HCH12g1332 1100 Gene3D Ribonuclease Inhibitor 225 333 IPR032675 -
HCH12g1332 1100 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Pfam Leucine rich repeat 533 591 IPR001611 GO:0005515(InterPro)
HCH12g1332 1100 Gene3D Phosphorylase Kinase; domain 1 751 842 - -
HCH12g1332 1100 Gene3D Transferase(Phosphotransferase) domain 1 843 1059 - -
HCH12g1332 1100 Gene3D Ribonuclease Inhibitor 532 704 IPR032675 -
HCH12g1332 1100 SUPERFAMILY RNI-like 323 670 - -
HCH12g1332 1100 SMART LRR_typ_2 628 653 IPR003591 -
HCH12g1332 1100 SMART LRR_typ_2 172 196 IPR003591 -
HCH12g1332 1100 SMART LRR_typ_2 148 171 IPR003591 -
HCH12g1332 1100 SMART LRR_typ_2 341 365 IPR003591 -
HCH12g1332 1100 SMART LRR_typ_2 437 461 IPR003591 -
HCH12g1332 1100 SMART LRR_typ_2 462 485 IPR003591 -
HCH12g1332 1100 SMART LRR_typ_2 555 579 IPR003591 -
HCH12g1332 1100 PRINTS Leucine-rich repeat signature 534 547 - -
HCH12g1332 1100 PRINTS Leucine-rich repeat signature 628 641 - -
HCH12g1332 1100 FunFam Predicted protein 192 288 - -
HCH12g1332 1100 SUPERFAMILY RNI-like 82 426 - -
HCH12g1332 1100 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
HCH12g1332 1100 Gene3D Ribonuclease Inhibitor 36 144 IPR032675 -
HCH12g1332 1100 SMART LRR_sd22_2 531 554 - -
HCH12g1332 1100 SMART LRR_sd22_2 628 656 - -
HCH12g1332 1100 SMART LRR_sd22_2 172 198 - -
HCH12g1332 1100 SMART LRR_sd22_2 461 487 - -
HCH12g1332 1100 SMART LRR_sd22_2 413 439 - -
HCH12g1332 1100 SMART LRR_sd22_2 555 587 - -
HCH12g1332 1100 SMART LRR_sd22_2 341 362 - -
HCH12g1332 1100 Pfam Protein kinase domain 772 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1332 1100 ProSiteProfiles Protein kinase domain profile. 769 1059 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1332 HCH-Chr12:29763757 HCH6g1438 HCH-Chr6:48138116 4.30E-95 dispersed
HCH12g1332 HCH-Chr12:29763757 HCH8g1403 HCH-Chr8:48719220 1.10E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81136 PF00069 Pkinase 1.80E-38 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1332 - - - 0.0