Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1335 ATGAATAATTTTTCAGGGAGTTTACCTCCTGCACTTGGAAATTTATCAAACTTAACAAGATTACTTCTTGCCTCCAACAACTTCTCTGGGGATCTCCCACCTTCACTGGAAAGACTTGCATTGTTAAAGGAGTTTCGAATTAGTGATAATCGCTTCTCTGGGCAAATACCAAAATTTATTCAGCATTGGACAAATCTTGATCTACTAGCTATTCAGGCAAGCGGATTGAGTGGGCCAATTCCTTCTGAAATTGGACTTCTGACAAAGTTAACTGACTTGAGAATCAGTGACTTGAATGGAGCTTCATCACCATTCCCACCCCTTAGTACCTTGATAAATTTGAAAAATCTGATACTGAGAAGTTGCAACATAACTGGGGTGCTGCCCGACAATCCAGATGGAATGACAAACTTGCAAACCTTAGACCTCAGCTTTAACAGAATAAGTGGACAAATCCCTACCAGCTTTGAAGCTTTGAAGAACGTAGATAGAATATATTTAACTGGAAACTTGCTAAATGGATCAGTGCTTCCTTGGATGCTACGACACTCGAAGAGGATCGATCTCTCTTATAACAAATTCACAGAGATGAATGCTCAAAACCCAGGTTGTCAATCTCAAAATTTAAACCTATTTGCAAGCTCTTCACAGGACAATACTTCCACAATCGTTTCATGTTTGCAACACGCTGCTTGTACAAACACTTTGGACTCTCTCCATATCAACTGCGGTGGGGAGGAAAAATTGATTGATGGAACAACCAGATTTGCAGCAGATCAAAATTCTGGCACGCCATCCTTGTTTTCTATAGGTGGATTAAGTTGGGCATTTAGCAACACGGGTAATTTTATGAATCGTGAGGGCCAAATAAATAATTTTACTGCAAACAATTTATCTGCTCTCTCAATGTCAAATCCTGAATTGTACATGACGGCACGCATTTCTCCAATCTCTCTTACTTATTATGCATATTGCATGGAAAATGGAAGCTACACTGTAAGCCTCCATTTTGCAGAGATAATGTTTACTAATGACAATACTTTCAGAAGCCTTGGAAGACGTGTATTTGATGTATACATTCAGCGAAAGCTGGAGTTGAAGGATTTTAATATTGCAAAGGAAGCAGGTGGTGTTGGCAAGTCTTACGTATACAATTGTACTGTTTCTGTGACTCATGGAACTTTGGAGATACGCTTCTTTTGGGCTGGGAAGGGGACAAATGCTATCCCTGTGGCAGGAGTTTATGGTCCTTTGATTTCAGCCATTTCTGTGGTTCGTGACCAGCTACCATCAGAAGGTGGAAATACCATTTTGGCCGGAGCAGTGGCTGGAATCGTGGTTGGTGTGGCCTTTATTATCTTCTTGTTTCTGGGATTCCTGTGGTGGAGAGGTTGTCTAACAAAGAAAAACACGCTTGAACAAGAGTTGAAGGGTCTAGATCTTGCAACAAGTTCATTTACATTGAGGCAAATTAAAGCTGCCACAAACAATTTTGACGTTCTCAATAAGATAGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGGTGTTCTTGTAGATGGCACCATAATTGCAGTGAAGCAACTTTCTTCAAAATCGAAGCAAGGAAATCGTGAATTTGTTAATGAGATAGGGATGATATCTGCTTTGCAACACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGGAATCAACTTTTGCTAGTATACGAGTACTTGGAAAATAATAGCCTTGCCCGTGCCTTATTTGGATCTGAAGAATCTCAACTGAAATTGGATTGGCCAACAAGACACAAGATTTGTGTTGGTATAGCGAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTGAAGATTGTTCACAGAGACATCAAAGCTACCAATGTTCTGCTAGATAAAAATCTCAACCCCAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAATACACATATAAGCACTCGAATTGCTGGAACATTTGGATATATGGCACCAGAATATGCAATGCGAGGCTACCTAACAGACAAAGCCGACGTTTACAGCTTTGGAATTGTGGCCCTGGAAATAGTGAGCGGTCGGAGCAACACTAGTTACCGATCAAAAGATGACTGTTTTTATCTTCTTGATTGGGCACATATTTTAAATGAGAGAGGCAGTTTAATAGAGCTAGTTGATCCACGGTTAGGCTCTGAGTTTAATAAGGGAGAAGTGATGGCAATGATCAATATTGCTCTTCAGTGCACTAATGTCACTGCTACAGAAAGACCTGCCATGTCATTGGTGGTGAGCATGCTGGAAGGTAAGGTTGTTGTGAACGAGGTGGTTTCAGCTCCAAGCGTCTCAAAACAAGTTATGAATGTAATGTGGTCCCACCTTCATCACCACGAAGGCCAAACAACAAGTGAGAGCCAGACGCAAAGCATGTTAATGGATGGGCCACGAACTGGTTCTTCAACCTCATTCAGTGATCTTTACCCCATCAACTTGGATTCTACACATGAGGGTAAGAACTAA 2526 40.86 MNNFSGSLPPALGNLSNLTRLLLASNNFSGDLPPSLERLALLKEFRISDNRFSGQIPKFIQHWTNLDLLAIQASGLSGPIPSEIGLLTKLTDLRISDLNGASSPFPPLSTLINLKNLILRSCNITGVLPDNPDGMTNLQTLDLSFNRISGQIPTSFEALKNVDRIYLTGNLLNGSVLPWMLRHSKRIDLSYNKFTEMNAQNPGCQSQNLNLFASSSQDNTSTIVSCLQHAACTNTLDSLHINCGGEEKLIDGTTRFAADQNSGTPSLFSIGGLSWAFSNTGNFMNREGQINNFTANNLSALSMSNPELYMTARISPISLTYYAYCMENGSYTVSLHFAEIMFTNDNTFRSLGRRVFDVYIQRKLELKDFNIAKEAGGVGKSYVYNCTVSVTHGTLEIRFFWAGKGTNAIPVAGVYGPLISAISVVRDQLPSEGGNTILAGAVAGIVVGVAFIIFLFLGFLWWRGCLTKKNTLEQELKGLDLATSSFTLRQIKAATNNFDVLNKIGEGGFGPVYKGVLVDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYLENNSLARALFGSEESQLKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSYRSKDDCFYLLDWAHILNERGSLIELVDPRLGSEFNKGEVMAMINIALQCTNVTATERPAMSLVVSMLEGKVVVNEVVSAPSVSKQVMNVMWSHLHHHEGQTTSESQTQSMLMDGPRTGSSTSFSDLYPINLDSTHEGKN 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30382504 30406431 + evm.model.ptg000002l.324 HCH12g1335 556182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1335 841 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 79 - -
HCH12g1335 841 Gene3D Transferase(Phosphotransferase) domain 1 574 785 - -
HCH12g1335 841 Gene3D Ribonuclease Inhibitor 101 209 IPR032675 -
HCH12g1335 841 Gene3D - 238 429 - -
HCH12g1335 841 FunFam Putative LRR receptor-like serine/threonine-protein kinase 574 781 - -
HCH12g1335 841 Pfam Leucine Rich Repeat 17 39 IPR001611 GO:0005515(InterPro)
HCH12g1335 841 Pfam Leucine Rich Repeat 42 62 IPR001611 GO:0005515(InterPro)
HCH12g1335 841 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 467 573 - -
HCH12g1335 841 SUPERFAMILY Protein kinase-like (PK-like) 483 799 IPR011009 -
HCH12g1335 841 MobiDBLite consensus disorder prediction 803 831 - -
HCH12g1335 841 Gene3D Phosphorylase Kinase; domain 1 464 573 - -
HCH12g1335 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1335 841 Gene3D Ribonuclease Inhibitor 1 100 IPR032675 -
HCH12g1335 841 Pfam Malectin domain 239 422 IPR021720 -
HCH12g1335 841 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 236 427 - -
HCH12g1335 841 SUPERFAMILY L domain-like 2 200 - -
HCH12g1335 841 MobiDBLite consensus disorder prediction 799 841 - -
HCH12g1335 841 CDD STKc_IRAK 504 771 - -
HCH12g1335 841 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515(InterPro)
HCH12g1335 841 Pfam Protein tyrosine and serine/threonine kinase 500 768 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1335 841 SMART serkin_6 498 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1335 841 ProSiteProfiles Leucine-rich repeat profile. 137 160 IPR001611 GO:0005515(InterPro)
HCH12g1335 841 ProSiteProfiles Protein kinase domain profile. 498 779 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1335 841 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 785 IPR051824 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1027 HCH-Chr12:7617345 HCH12g1335 HCH-Chr12:30382504 9.80E-304 dispersed
HCH12g1335 HCH-Chr12:30382504 HCH6g0622 HCH-Chr6:37425742 2.60E-209 dispersed
HCH12g1335 HCH-Chr12:30382504 HCH3g1056 HCH-Chr3:15478487 9.20E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81137 PF07714 PK_Tyr_Ser-Thr 8.90E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1335 - - - 0.0