Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1342 ATGGGATCTACTTCAGTAGTAGATTTAATAGAGGCCTCATCTGGTGTCCATTTTTCTGGACTTCATATGGATAGTTTGAAGCAACAAAATGGGCAGATGGAGAAATTGATGTCAGAAACTGGAAGTATCCATAAACAACCTTTTGTTATTGGGGTTGCTGGTGGAGCGGCCTCTGGGAAGACGACAGTTTGTGATATGATAATTCATCAACTCCATGATCAGCGTGTTGTTCTTGTTAACCAGGATTCCTTCTATCACAATTTAACCTCTGAGGAACTTACACAAGTACATGAATACAACTTTGACCATCCTGATGCATTTGACACAGAGCAACTTTTAAATTCAATGGATAATCTGAGGCATGGGCAGTGTGTAGATATTCCAAAATATGACTTCAAAAGTTATAAAAATAGCGTGTTTCCACCAAGAAGGGTTAACCCTTCAGATGTTATCATTTTGGAAGGAATTCTTGTTTTCCATGACCCACGTGTTCGAGAATTGATGAACATGAAGATATTTGTCGATACAGATGCTGATGTTCGTCTAGCAAGAAGGATAAGACGTGATACTATGGAGAAGAGTAGAGACATAGCTGCAGTACTTGATCAGTACTCAAAATTTGTAAAGCCTGCTTTTGACGATTTCATTCTTCCAACAAAGAAGTATGCTGATATCATCATTCCTAGAGGGGGTGATAATCATGTCGCTATTGATTTGATTGTACAGCATATTCGCACGAAGCTTGGTCAGCATGATCTTTGTAAAATATACCCTAATTTATATGTCATCCATTCAACTTTTCAGATACGGGGTATGCATACTTTAATACGAGATGCTAAAACAACAAAGCATGATTTTGTGTTTTATGCTGACCGGTTGATTCGTTTGGTTGTTGAACATGGTCTGGGACATTTACCATTTACAGAAAAGCAGGTGATCACTCCAACCGGGTCTGTATATTCTGGCGTAGATTTCTGTAAGAGGTTATGTGGTATATCTGTTATCAGGAGTGGTGAGAGCATGGAAAATGCTTTGCGGGCATGTTGTAAAGGCATCAAAATAGGGAAGATTCTTATTCATAGGGAAGGTGATAATGGCAAACAGTTAATTTATGAAAAACTACCTGCGGATATATCTGATAGGCATGTGTTGCTATTGGATCCCATCCTCGGCACAGGAAACTCGGCGGTGCAAGCTATCTCTTTGCTCATAAGAAAGGGTGTTCCAGAGTCTAATATTATATTTCTCAATCTCATATCAGCACCTCAAGGCGTGCATGTGGTGTGTAAACGTTTTCCCAGAATAAAGATTGTGACATCTGAAATTGACACTGGCCTGAATGACGATTTTCGTGTGGTGCCTGGTATGGGCGAGTTTGGGGACCGGTATTTCGGAACCGATGACGACGAACAAGTGAAGCTTCTCCACTGTGGTTCTTTCAAGTAA 1446 40.04 MGSTSVVDLIEASSGVHFSGLHMDSLKQQNGQMEKLMSETGSIHKQPFVIGVAGGAASGKTTVCDMIIHQLHDQRVVLVNQDSFYHNLTSEELTQVHEYNFDHPDAFDTEQLLNSMDNLRHGQCVDIPKYDFKSYKNSVFPPRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTMEKSRDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAKTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGISVIRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPADISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPQGVHVVCKRFPRIKIVTSEIDTGLNDDFRVVPGMGEFGDRYFGTDDDEQVKLLHCGSFK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30973836 30987341 + evm.model.ptg000002l.317 HCH12g1342 556189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1342 481 Gene3D - 43 250 IPR027417 -
HCH12g1342 481 Gene3D - 251 466 IPR029057 -
HCH12g1342 481 PRINTS Uridine kinase signature 47 64 - -
HCH12g1342 481 PRINTS Uridine kinase signature 215 228 - -
HCH12g1342 481 PRINTS Uridine kinase signature 77 88 - -
HCH12g1342 481 PRINTS Uridine kinase signature 193 204 - -
HCH12g1342 481 PRINTS Uridine kinase signature 122 137 - -
HCH12g1342 481 PRINTS Uridine kinase signature 179 189 - -
HCH12g1342 481 SUPERFAMILY PRTase-like 250 467 IPR029057 -
HCH12g1342 481 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
HCH12g1342 481 NCBIfam uridine kinase 46 247 IPR000764 -
HCH12g1342 481 PANTHER URIDINE KINASE 44 405 - GO:0005737(PANTHER)
HCH12g1342 481 CDD PRTases_typeI 324 439 IPR000836 -
HCH12g1342 481 CDD UMPK 49 247 IPR000764 -
HCH12g1342 481 FunFam Uridine kinase 44 250 - -
HCH12g1342 481 Pfam Uracil phosphoribosyltransferase 265 466 - -
HCH12g1342 481 FunFam Uridine kinase 251 466 - -
HCH12g1342 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 240 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1342 K00876 - - csv:101219714 871.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1342 HCH-Chr12:30973836 HCH9g0068 HCH-Chr9:387245 3.30E-209 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g0445 . 33 188 PRT Gene Family AT1G80050 78.8 1.0e-66 249.6
HCH5g0390 . 30 180 PRT Gene Family AT1G80050 77.5 9.2e-63 236.5
HCH6g0996 . 30 180 PRT Gene Family AT1G80050 76.8 1.6e-62 235.7
HCH4g0591 . 104 256 PRT Gene Family AT1G80050 68.0 7.0e-55 210.3
HCH4g0445 . 1 148 PRT Gene Family AT5G11160 80.4 6.2e-62 233.8
HCH4g0591 . 82 219 PRT Gene Family AT5G11160 72.5 8.1e-54 206.8
HCH6g0996 . 8 145 PRT Gene Family AT5G11160 73.2 1.4e-53 206.1
HCH5g0390 . 8 145 PRT Gene Family AT5G11160 74.6 1.8e-53 205.7
HCH4g0591 . 75 257 PRT Gene Family AT1G27450 79.8 3.6e-79 291.2
HCH6g0996 . 1 180 PRT Gene Family AT1G27450 74.4 5.9e-74 273.9
HCH5g0390 . 7 180 PRT Gene Family AT1G27450 74.1 8.0e-71 263.5
HCH4g0445 . 11 183 PRT Gene Family AT1G27450 68.8 1.7e-65 245.7
HCH2g0502 . 72 554 PRT Gene Family AT2G16570 84.7 1.7e-241 832.0
HCH2g0502 . 72 554 PRT Gene Family AT4G34740 86.0 1.4e-243 839.0
HCH2g0502 . 1 527 PRT Gene Family AT4G38880 67.9 5.3e-200 694.1
HCH4g0591 . 75 257 PRT Gene Family AT1G27450 79.8 3.6e-79 291.2
HCH6g0996 . 1 180 PRT Gene Family AT1G27450 74.4 5.9e-74 273.9
HCH5g0390 . 7 180 PRT Gene Family AT1G27450 74.1 8.0e-71 263.5
HCH4g0445 . 11 183 PRT Gene Family AT1G27450 68.8 1.7e-65 245.7
HCH4g0445 . 33 188 PRT Gene Family AT1G80050 78.8 1.0e-66 249.6
HCH5g0390 . 30 180 PRT Gene Family AT1G80050 77.5 9.2e-63 236.5
HCH6g0996 . 30 180 PRT Gene Family AT1G80050 76.8 1.6e-62 235.7
HCH4g0591 . 104 256 PRT Gene Family AT1G80050 68.0 7.0e-55 210.3
HCH5g0390 . 1 97 PRT Gene Family AT4G22570 85.7 2.8e-44 174.5
HCH6g0996 . 5 97 PRT Gene Family AT4G22570 86.0 1.8e-43 171.8
HCH4g0591 . 77 171 PRT Gene Family AT4G22570 78.9 3.6e-39 157.5
HCH4g0445 . 11 100 PRT Gene Family AT4G22570 81.1 1.4e-38 155.6
HCH6g0996 . 1 96 PRT Gene Family AT4G12440 84.4 5.9e-41 163.3
HCH5g0390 . 1 96 PRT Gene Family AT4G12440 83.3 2.3e-40 161.4
HCH4g0591 . 75 170 PRT Gene Family AT4G12440 80.2 1.6e-38 155.2
HCH4g0445 . 4 99 PRT Gene Family AT4G12440 80.2 2.1e-38 154.8
HCH4g0445 . 1 148 PRT Gene Family AT5G11160 80.4 6.2e-62 233.8
HCH4g0591 . 82 219 PRT Gene Family AT5G11160 72.5 8.1e-54 206.8
HCH6g0996 . 8 145 PRT Gene Family AT5G11160 73.2 1.4e-53 206.1
HCH5g0390 . 8 145 PRT Gene Family AT5G11160 74.6 1.8e-53 205.7
HCH13g0264 . 1 186 PRT Gene Family AT1G71750 63.5 4.0e-68 254.6
HCH12g1342 . 16 469 PRT Gene Family AT1G55810 84.6 2.4e-225 778.1
HCH9g0068 . 19 481 PRT Gene Family AT1G55810 74.4 1.8e-201 698.7
HCH12g1342 . 66 468 PRT Gene Family AT3G27440 76.4 7.9e-183 636.7
HCH9g0068 . 79 481 PRT Gene Family AT3G27440 75.7 2.8e-180 628.2
HCH9g0068 . 1 481 PRT Gene Family AT3G27190 86.1 9.3e-244 839.3
HCH12g1342 . 3 468 PRT Gene Family AT3G27190 73.9 3.3e-209 724.5
HCH9g0712 . 27 287 PRT Gene Family AT3G53900 69.5 1.2e-103 373.2
HCH12g1342 . 1 469 PRT Gene Family AT4G26510 84.6 3.4e-235 810.8
HCH9g0068 . 5 481 PRT Gene Family AT4G26510 76.3 7.5e-214 740.0
HCH9g0068 . 1 481 PRT Gene Family AT5G40870 87.6 1.8e-247 851.7
HCH12g1342 . 3 471 PRT Gene Family AT5G40870 73.4 3.4e-209 724.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61