Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1363 ATGGCACTTCTTGAACTGTTCTTATTTTGGTTTCTTTCTTTTTGCTCATGTGTTAACCATGGCTATGGTGGAAGCTGGATAACTAATGGCCGTGCTACTTTCTATGGAGGTCCGGATGCTTATGGTACAATGGGTGGGGCTTGTGGATATGGAAACAGTCAGGAATATGGAACGAAAACAACAGCTTTGAGCACAGCTTTGTTCAAAAGTGGACTTAGCTGTGGGGCTTGCTTTGAGATCAAATGTGTCAATGACCCAAAATGGTGCCTCCATGGCTCTGTTGTGGTCACTGCTACAAACTTCTGTCCACCTGGCGGTTGGTGTGAGTCTCCCCACCACCATTTTGATCTTTCCCAACCCGCCTTCGAGACCATTGCTCACTCCATCGCTGGGGTAGTGCCTGTGGCTTACAGAAGGGTACCCTGTGGGAGGAAGGGAGGCATAAGATTCACAATAAATGGGAACCCCTATTTCAACCTAGTATTGATAACCAACGTTGGAGGAGCAGGAGATGTTCATGCAGTTTATATTAAAGGGTCAAAGACTGGTTGGAAAAGCATGAGTAGGAATTGGGGTCAAAACTGGCAGAGCAACGATAACCTAGTTGGACAAAGCCTCTCTTTTAAGGTTACTATTAGCAATGACCGGACACTTGTCTCTTACAATGTTGCCCCTTCTGTCTGGTCCTTCGGACAGACCTTTTCTGGAAAACAATTCACTTGA 723 45.92 MALLELFLFWFLSFCSCVNHGYGGSWITNGRATFYGGPDAYGTMGGACGYGNSQEYGTKTTALSTALFKSGLSCGACFEIKCVNDPKWCLHGSVVVTATNFCPPGGWCESPHHHFDLSQPAFETIAHSIAGVVPVAYRRVPCGRKGGIRFTINGNPYFNLVLITNVGGAGDVHAVYIKGSKTGWKSMSRNWGQNWQSNDNLVGQSLSFKVTISNDRTLVSYNVAPSVWSFGQTFSGKQFT 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34433414 34434530 - evm.model.ptg000002l.296 HCH12g1363 556210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1363 240 CDD DPBB_EXPA_N 28 142 - -
HCH12g1363 240 Gene3D - 15 142 IPR036908 -
HCH12g1363 240 PRINTS Expansin signature 55 69 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin signature 82 93 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 147 IPR007112 -
HCH12g1363 240 PANTHER EXPANSIN-A15 11 239 IPR002963 GO:0009664(InterPro)
HCH12g1363 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
HCH12g1363 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
HCH12g1363 240 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
HCH12g1363 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
HCH12g1363 240 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
HCH12g1363 240 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
HCH12g1363 240 Gene3D - 143 239 IPR036749 -
HCH12g1363 240 SMART dpbb_1 60 137 IPR007112 -
HCH12g1363 240 Pfam Lytic transglycolase 60 137 IPR009009 -
HCH12g1363 240 FunFam Expansin 147 239 - -
HCH12g1363 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
HCH12g1363 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
HCH12g1363 240 SUPERFAMILY Barwin-like endoglucanases 7 165 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1363 HCH-Chr12:34433414 HCH4g0896 HCH-Chr4:5762602 6.70E-94 dispersed
HCH12g1363 HCH-Chr12:34433414 HCH3g0070 HCH-Chr3:402889 9.90E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1363 - - - 0.0