Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1384 ATGGTAATTAATAAGCAAAATCTGGTTTACGTAATGCTAATAATTACAACAATATTGGCAGTCAAAGCAGAAGAAACTCCTCCTCCTCCTCAGCCTTGGTTCTCCAAGCCAGGATGTCCCAATCGATGTGGTGAAGTAGAAATTCCATTTCCTTTTGGAATGACTCCCGACTGTTACCTCGACGATTCCTTCCTCATAACCTGCAACAACTCATTCAATCCCAACAAACCCTTCGTGGGCGATGTTCCTATTTTGAACATCTCCCTCGACACTGGTGAGTTGCGGATCACTAATCTCGTAGCTAACTATTGTTTCAATAGCGATGGAGACGTGCTTGGCGATAACCAAACGTTTCTCGAAACCGGGCAGTTTACGGTTTCGACGAAAAACATCTTCACCGTGATAGGCTGCAGCACGGTTTCGGTGATCGGAGGGCTTTGGGATGGAGAGAGCTACATGTCAGGGTGTGCTTCTTTCTGCAGTAGTTATAGATATGTGAGAAACGGGTCGTGTTCTGGAGTTGGGTGTTGCCAAACCGCGCTTCCTGGTGGATTGAAACAAGTGAATTTATCAGTGGAAGGCAGTGACTTGACTATTGGTTCTGATTTGCATGCATGTGGTTATAGCTTTATTGTTGAAGAAAGTGAATTCAATTTCTCAACTGCTTACCTTCCACATTTCCCGAACGATACGGTGCCGGTGGTTTTAGATTGGAGTGTTGGGAATGAGGGTTGTGAAAGCCTTGAAAATAGGTCTGAGTATGCGTGTAAGGGAAATAGTAGCTGCTTTAATGCTGAAAATATGTCTGGTTATCGATGCATGTGTTTGCTAGGGTTTGGTGGGAATCCATATCTTCCTGATGGTTGCCAAGACATTAATGAATGCGATGGTCCAGACCAAAATAACTGTACGGATATATGTACAAATAGAGAGGGAAGCTACGAATGTTCTTGCCCAAAAGGACTCTACGGTGATGGAAGAAAGGATGGTACGGGGTGTGTTCGTCGGCGACGCTTTCAAGTTATTCTAATTATTCTCGGTGTTGGCGTTGGCATCATGGTACTCCTAGTGAGTTGTTCTTGGTTTTACATTGGATTCCGAAGATGGAAGCTGATTAAGCTGAAAGAAAACTTTTTTCAACGAAATGGAGGGCTAATGCTGAAGCAACAACTTTCCATTAGAGATGAATCAGCAGCTCCAAGCGCAAAGATATTCATGGCAGAAGAGCTACAAAAAGCTACCAATAATTATGCTGAAGATAGAATTGTTGGAAAAGGTGGTTTTGGTACAGTTTACAAAGGAATCCTCCCAAATGGCACTGCAGTTGCAATTAAGAAATCAAAGATTTTGGATCAAAACCAAAGCAGCCAATTCATCAATGAAGTTATTGTATTATCACAAATCAACCATAGGAATGCTGTCAGACTTTTGGGCTGTTGCTTAGAGGAAGAAGTCCCACTTTTGGTTTATGAATTTATCTCCAATGGTACTCTCTTTGATCACATCCATGACAAGAGAAAATCAAAACCTTCTATTCCTTGGAAAACCCGTCTTAAGATTGCGTCGGAAACGGCGGGAGTTCTCTCATATTTGCATTCTTCTGCTAGTATTCCTATCATTCACAGAGATGTCAAATCTACAAACATACTATTGGATGATAACTACACTACAAAAGTTTCCGATTTTGGTGCCTCCAAATTGGTTCCTTTAGATCAAGCTGAGTTATCTACTATTGTACAAGGAACTCTTGGCTACCTCGATCCCGAGTACTTACAAACTAGTCAGTTAACCGAGAAGAGTGATGTTTACAGTTTCGGAGTGGTTCTCGCCGAGTTAATGACCGGGAAGATGCCTCTTTCTTTTAATAGGCCAGAGAAAGAAAGAAATCTATCCATGTATTTTCTTGTTTCTTTGAAGGAAGGTCATGTTCGAGATATTTTGGACAGTAATATTGCAAATGATGTAAGTAATAAGCAACTGAAAGAAGTTTCCACCATTGTTAAGAGGTGCTTGAGAGTGAAAGGGGAAGAAAGACCAACGATGAAGGAAGTAGCTGCAAAGCTTGAAGGTCTATATCAAATGATGATTGATCATCCCTGGGATCTCGATAAGTCATATGGAGAGGAAACAGAGGGTTTACTTAGTGAGTCGAATGATCTTCCTATTTATTCTCTTGATGAAGAAATTGAAGGTATAACTACTAGTAACCAATATAGCAGTACGACGAATCAAATAATATCAAACGTAAATTCTGGGAGGTAA 2262 41.03 MVINKQNLVYVMLIITTILAVKAEETPPPPQPWFSKPGCPNRCGEVEIPFPFGMTPDCYLDDSFLITCNNSFNPNKPFVGDVPILNISLDTGELRITNLVANYCFNSDGDVLGDNQTFLETGQFTVSTKNIFTVIGCSTVSVIGGLWDGESYMSGCASFCSSYRYVRNGSCSGVGCCQTALPGGLKQVNLSVEGSDLTIGSDLHACGYSFIVEESEFNFSTAYLPHFPNDTVPVVLDWSVGNEGCESLENRSEYACKGNSSCFNAENMSGYRCMCLLGFGGNPYLPDGCQDINECDGPDQNNCTDICTNREGSYECSCPKGLYGDGRKDGTGCVRRRRFQVILIILGVGVGIMVLLVSCSWFYIGFRRWKLIKLKENFFQRNGGLMLKQQLSIRDESAAPSAKIFMAEELQKATNNYAEDRIVGKGGFGTVYKGILPNGTAVAIKKSKILDQNQSSQFINEVIVLSQINHRNAVRLLGCCLEEEVPLLVYEFISNGTLFDHIHDKRKSKPSIPWKTRLKIASETAGVLSYLHSSASIPIIHRDVKSTNILLDDNYTTKVSDFGASKLVPLDQAELSTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLAELMTGKMPLSFNRPEKERNLSMYFLVSLKEGHVRDILDSNIANDVSNKQLKEVSTIVKRCLRVKGEERPTMKEVAAKLEGLYQMMIDHPWDLDKSYGEETEGLLSESNDLPIYSLDEEIEGITTSNQYSSTTNQIISNVNSGR 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35632093 35638205 + evm.model.ptg000002l.275 HCH12g1384 556231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1384 753 SMART egf_5 244 290 IPR000742 -
HCH12g1384 753 SMART egf_5 294 334 IPR000742 -
HCH12g1384 753 SMART serkin_6 417 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1384 753 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524(InterPro)
HCH12g1384 753 ProSitePatterns Calcium-binding EGF-like domain signature. 291 316 IPR018097 GO:0005509(InterPro)
HCH12g1384 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1384 753 SMART egfca_6 291 334 IPR001881 GO:0005509(InterPro)
HCH12g1384 753 Gene3D Phosphorylase Kinase; domain 1 385 492 - -
HCH12g1384 753 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 35 692 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH12g1384 753 ProSiteProfiles EGF-like domain profile. 247 290 IPR000742 -
HCH12g1384 753 FunFam Fibrillin 2 286 329 - -
HCH12g1384 753 Pfam Protein kinase domain 417 685 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1384 753 CDD EGF_CA 291 325 - -
HCH12g1384 753 CDD STKc_IRAK 423 691 - -
HCH12g1384 753 Gene3D Plasmodium vivax P25 domain 235 340 - -
HCH12g1384 753 FunFam Wall-associated receptor kinase 2 493 711 - -
HCH12g1384 753 FunFam Wall-associated receptor kinase 2 386 492 - -
HCH12g1384 753 SUPERFAMILY Protein kinase-like (PK-like) 399 688 IPR011009 -
HCH12g1384 753 ProSiteProfiles Protein kinase domain profile. 417 701 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1384 753 Pfam Wall-associated receptor kinase galacturonan-binding 39 97 IPR025287 GO:0030247(InterPro)
HCH12g1384 753 SUPERFAMILY EGF/Laminin 290 326 - -
HCH12g1384 753 Gene3D Transferase(Phosphotransferase) domain 1 493 697 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1384 HCH-Chr12:35632093 HCH13g0173 HCH-Chr13:1166771 1.70E-212 dispersed
HCH12g0017 HCH-Chr12:129051 HCH12g1384 HCH-Chr12:35632093 3.60E-194 transposed
HCH12g1384 HCH-Chr12:35632093 HCH13g0172 HCH-Chr13:1161633 8.60E-204 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81138 PF00069 Pkinase 7.30E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1384 - - - 0.0