Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1400 ATGCAAAAAGGAGTCATCTTCCTCATTTTCCTACTGGTATTGATACCAGTGGCAATAGTAGTAGAAGCGTCTGCAGCAAAATCTCCTTTTGTTCCGAATCCAAACTGCGAGAGACGCTGCGGCGATGTAGAAATCCCATACCCCTTTGGCATGTCCCCAGACTGTTACATGAATAAAGATTTTTCAATTATTTGTAATCATTCTCAATCCTCTATGAAACCAGCCAAGCCATATATTGGTAATATTGAGGTGCAATACATAAATATTACTACAAATAAAGTTCTAGTAAGGATGTTTACAGCCCAAACATGCTATAAGAATGACTCTGAAACAAGTCAATTTGACGTTCAGATATCCTTGGCTGGTACATCCTATACCATCTCTTCCATGAACGGATTTTTCGGTATCGGCTGCAACGTTAGAGCGGAATTACACGGTTTGCTTTATGGACAAGATTATACTTTTGGTTGTATGTCTTATTGCAGCAATATAAGCCAAGTAGATGATGGAACTTGCTCTGGTATTGGATGCTGTCAGATCAATATTCCCACAGGGTTGACACTAAGCAATTTTTCAGTACAAAGATTGATGAATAAATCTCCAGTCTGGGAATTCAATCCATGCTTGTATGCTTTTTTGGTGGATAAGAATAAGTTTAGTTTTTCCAAACGTGATCTTTCTAATTCAAGTTTAGATTTGGTTCCATTTGAAATGAGTTGGAGGATAGAAAATGAAACGTGTGATTCCGCTAAGAAAAATAAAAATTACGTATGTAGTGCAAATAGTGATTGCTCTCCAACAAAACGTTGGATTGGATATTTTTGTACCTGCTCGGAAGGCTTCCAAGGGAATCCGTACTTGCCTGAAGGTTGCAAAGATATAAATGAGTGTTTGGATCCACATCTGAATCAATGTTCACAGAATTGTACAAATACAGAGGGAAGTTATATCTGTTCTTGTTTCGACGATTACCGTGGAAAGGGGAGAAAAGACGGGGAAGGTTGCGAACAATTGCCTCTGATACTAAGAGATAAATTGACAGCCATCAAAATAATAGTAGCTGTTGTCATAAGCTTCATGGGCGCAATTCTGGGTGCATCTTGGTTATTCTTGGTGTTGAAAAAGAGAAAGTTCATGAATATGAAGGAAGAGTACTTTAAAAAGAATGGAGGATTTATCTTGCAACAACAATTATCTTCACAAGGATCGAGTGCATCATTCAATATTTTCTCAGCTGAAGAGCTAAAGAATGCTACTAATAACTACCATGAGAGTACAGTAATTGGTAAAGGAGGCTTTGGCACTGTCTATAAAGGAGTTTTGTCAGATAACAAAGTAATTGCAATCAAGAAATCCAACACAGTTGATAAAATTGAAATCGAGCAGTTCATTAATGAGGTGATTATACTTTCACAAATCAACCATAGGAATGTCATCAAACTCTTGGGTTGTTGTTTAGAGACAAAGGTTCCTTTATTAGTCTATGAAGTTGCCTCTAATGGAACGCTCTTCAGCTACATTCATAATGAAAACAATTCAAGCCCCGTTCCGTGGGAGACTCGATTGAGGATCGCTTCCGAAACCGCAGGAGCATTATCCTATTTACATTTTGCTGTTTCTACTCCCATAATCCATAGAGATATAAAGTCTACAAATATTCTCTTGGATGAAAACTATACAGCAAAAGTATCCGACTTCGGGGCTTCGAAGTTCATTCCGATCGATCAAACACAACTGGCAACGGTTGTGCAAGGAACTCTTGGATATTTAGATCCCGAATATCTACAAACTAGCCAATTAACTGAGAAAAGCGATGTTTATAGTTTCGGAGTTGTTCTTCTCGAACTACTTACAGGGTTATTACCGCTTTCTTTTAATCGGTCTAACGAGGAGAGATGTCTTGCTATGATGTTTATTTACTACCTAAAGGAAGATAAACTGTTTGAAATTGTGGAAAGTCACATGGTGAAGGAAGAAAATATTGAGGAAATAAAGGAAGTGGCTGAGCTTGCAAAAAGGTGCTTGAGCATTAAAGGGGATGAGAGGCCCACCATGAAAGAAGTGGCTATTGAGCTTGAAGAAATCAAGATGAAGACTAAAAAACAACAAGGTTTTAACAATGAAGAGACCAAAGTTTCAATGAGTGGGGCATCTGAAACTTTTGAATATGCTGATTATGGCCCTTCGAATTCGCAGGATTATGATAGCATGAAGAATCATACGGTAGTGCGTATCAAAGACGGAAGATAA 2250 37.96 MQKGVIFLIFLLVLIPVAIVVEASAAKSPFVPNPNCERRCGDVEIPYPFGMSPDCYMNKDFSIICNHSQSSMKPAKPYIGNIEVQYINITTNKVLVRMFTAQTCYKNDSETSQFDVQISLAGTSYTISSMNGFFGIGCNVRAELHGLLYGQDYTFGCMSYCSNISQVDDGTCSGIGCCQINIPTGLTLSNFSVQRLMNKSPVWEFNPCLYAFLVDKNKFSFSKRDLSNSSLDLVPFEMSWRIENETCDSAKKNKNYVCSANSDCSPTKRWIGYFCTCSEGFQGNPYLPEGCKDINECLDPHLNQCSQNCTNTEGSYICSCFDDYRGKGRKDGEGCEQLPLILRDKLTAIKIIVAVVISFMGAILGASWLFLVLKKRKFMNMKEEYFKKNGGFILQQQLSSQGSSASFNIFSAEELKNATNNYHESTVIGKGGFGTVYKGVLSDNKVIAIKKSNTVDKIEIEQFINEVIILSQINHRNVIKLLGCCLETKVPLLVYEVASNGTLFSYIHNENNSSPVPWETRLRIASETAGALSYLHFAVSTPIIHRDIKSTNILLDENYTAKVSDFGASKFIPIDQTQLATVVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLLELLTGLLPLSFNRSNEERCLAMMFIYYLKEDKLFEIVESHMVKEENIEEIKEVAELAKRCLSIKGDERPTMKEVAIELEEIKMKTKKQQGFNNEETKVSMSGASETFEYADYGPSNSQDYDSMKNHTVVRIKDGR 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36623873 36626450 - evm.model.ptg000002l.259 HCH12g1400 556247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1400 749 SUPERFAMILY EGF/Laminin 293 328 - -
HCH12g1400 749 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
HCH12g1400 749 ProSiteProfiles Protein kinase domain profile. 422 697 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1400 749 Pfam Wall-associated receptor kinase galacturonan-binding 36 95 IPR025287 GO:0030247(InterPro)
HCH12g1400 749 Gene3D Laminin 245 330 - -
HCH12g1400 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1400 749 FunFam Wall-associated receptor kinase 2 498 715 - -
HCH12g1400 749 SUPERFAMILY Protein kinase-like (PK-like) 402 692 IPR011009 -
HCH12g1400 749 SMART egf_5 296 336 IPR000742 -
HCH12g1400 749 SMART egf_5 246 292 IPR000742 -
HCH12g1400 749 ProSitePatterns Calcium-binding EGF-like domain signature. 293 318 IPR018097 GO:0005509(InterPro)
HCH12g1400 749 Pfam Protein kinase domain 422 688 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1400 749 FunFam Fibrillin 2 288 331 - -
HCH12g1400 749 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 703 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
HCH12g1400 749 FunFam Wall-associated receptor kinase 2 393 497 - -
HCH12g1400 749 SMART egfca_6 293 336 IPR001881 GO:0005509(InterPro)
HCH12g1400 749 ProSitePatterns Protein kinases ATP-binding region signature. 428 451 IPR017441 GO:0005524(InterPro)
HCH12g1400 749 Gene3D Transferase(Phosphotransferase) domain 1 498 721 - -
HCH12g1400 749 CDD EGF_CA 293 327 - -
HCH12g1400 749 Gene3D Phosphorylase Kinase; domain 1 389 496 - -
HCH12g1400 749 SMART serkin_6 422 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1400 HCH-Chr12:36623873 HCH12g1421 HCH-Chr12:37710498 5.20E-201 dispersed
HCH12g1399 HCH-Chr12:36564272 HCH12g1400 HCH-Chr12:36623873 3.50E-22 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81139 PF00069 Pkinase 1.20E-51 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1400 - - - 0.0