Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1402 ATGGTACCTTCGGGGCCATCCACTCCCATCGGTGGTGGTGCCCAGTCTGTTCCACCATCGCTTTTGAGATCGAATTCTGGAATGATGGGAGGTCAAGGGGGGCTGCCTTCACAGTCAGCTTTTCCATCTCTTGTATCACCGCGAACTCAGTTTAATAGTATGAATATGCTTGGTAATGTGCCAAGTGTGTCTTCTCTCCTTAATCAGTCATTTGGAAACGGAGTTCCGAATTCTGGGCCTTCTGGTATCGGCAGTAGTCAACGAGGAGGTATTGACCCTGCTTCCGAGTTGGATCCCTTTTCCCTTGTTGGCAATGGCGTGAGCTTTAATAATACCTCATCATCATTTGTGACATCAAATACAGCAAATCCTGTTTCATCTAGTCAAGTTTCAGGGCCACAATTTTCGAACCATTCTAGCGGCCAGATGTTACCCAATCAACAAAAATCACAGCAAACTGAAACTCAGAACTTTCAACATAGTCAGCATTCAATGCAACAGTTCTGCACGTCTAATAATACACAGCAGCAACAACAGCAATTTCAACAGATTCGAGGGGGCTTATCTGGTATTGGACACGTCAAGTTAGAGCCTCAAATGAGTAATAATGATCTTCAAGGGCAGCAACTACAGCAGCAACAGCAATTGCAGTCAATGAGGAATCTTGGTCCTGTGAAACTGGAACCACAACAACTTCAATCAATGAGAAACTTGGGTCCTGTGAAATTGGAACCTCAACATTCTGATCCGTCATTATTCCTACAACAGCAACAGCAGCAGCAACAGTTCCTCAATATGTCTCGGCAGTCCCCTCAGGCTGCTGCTGCGCAGATTAATCTGTTACATCAGCAAAGACTCTTGCAGTTGCAACAACACCATCAACAGCAACTTTTCAAGGCTTTACCTCAGCAAAGACCACATTTGCCACAGCAATTTCAGCAGCAAAGTTTGCCACTGAGATCCCCTGTAAAACCAATTTATGAACCTGGCATGTGTGCTCGACGTTTGACACATTATATGTATCAGCAACAGCACAAGCCGGAAGACAACAACATTGAGTTCTGGAGAAAATTTGTTGCTGAGTACTTTGCACCCCATGCCAAAAAGAAATGGTGCGTTTCCATGTATGGAAATGGTCGCCAAACAACAGGAGTTTTCCCACAGGATGTCTGGCATTGTGAAATATGCAATCGGAAGCCTGGCAGAGGGTTTGAAGCAACTGCCGAAGTTCTTCCAAGGCTATTCAAAATCAAGTATGAAAGTGGGACTCTAGAAGAACTATTATATGTTGATATGCCTCGTGAATATCATAATGCATCTGGACAAATTGTCCTAGATTATGCGAAAGCAATACAAGAAAGTATTTTTGAGCAACTTCGTGTTGTTCGTGATGGCCAACTTCGTATAGTTTTTTCTCCAGATTTAAAGATATGTTCCTGGGAATTCTGTGCTCGACGTCATGAAGAGCTTATTCCTCGCAGGTTACTGATACCTCAGGTTAGTCAGCTGGGGGCAGCTGCTCAAAAGTACCAGACTGCTATTCAAAATGTGTCGTCCAATTTATCTACTCCAGAGTTGCAAAGTAATTGCAATACGTTTGTGGGATCAGCTCGACAGTTGGCAAAGGCATTGGAAGTTCCCTTAGTAAATGACTTGGGATACACAAAGAGATATGTCCGGTGCCTTCAGATATCAGAAGTTGTCAATAGTATGAAAGACTTGATAGATTACAGCCAAGAAACTGCGACAGGGCCAATTGAAAGCTTGACCAAGTTTCCAAGGAGGACAAATGCTTCACCCGGGTTCCACAGCCAAGTTCAAAATGCTGAGCAGCAATTATCACAGCCGCAGAAAACAATCGATCAAAATGCAAACATTGACCAAAGCTCTGTTCAAGGTGCTGCTATACAGCTTGTCGGTCAAAATGCTAACAACGGTGTAACTAGTGCAAATAACGCTGTTAATCAAGCTTCAACATCATCTTCTGCAAGCACTATTGTTGGGTTACTCCATCAGAATTCCATGAACTCCAGACAGCCGAACTCTATTAGTGCAAGCAGCCCTTATGCAGGAAATTCTACTCAAATATCATCTCCAGGTTCTTCCACTACAATTGCCCCGGCGCAAGCAAACCCCTCATTCCAATCGCCTGCCTTATCCTCATCTAACAATCCTCCACAATCATCACTTGGTGCTGCGACTGCTACTAATCACACGAGTACAACTAATTCACCAGCAAACGTTTCCTTGCAACAGCAGCCAACACACTCTTTTGAAGCCGATCAAGGTGACTCCCAGAGTTCTGTACAAAAAATCATTCAGGAATACATGATGTCAAACCAACTAAATGGGATGAGCCCTATGACTGCTGTATCCTCTTTAGGAAATGATGTGAAAACCGTTAACGGGATGTTGCCTACAAGCAACATTATGGGTCTCAATGGAACAGCTAGTGGTGTTTCTTGTAATGGGAGCACGGGATATGGCTCGATGGGTGGGGGACTTGCCCAGGCTTCCATGATTAATGGAATGAGGTCTGCAATGGGAAATAACTCTATTTCGAATGGAAGAATAGGGATGGCATCATTGGCTCGAGAACAGAGCACTAATCATCAAGATTTGGGGAACCAGCTTCTTAATGGGCTAGGAGCAATTAATGGATTTAATAATAATCTTCAATTTGATTATTAA 2691 43.63 MVPSGPSTPIGGGAQSVPPSLLRSNSGMMGGQGGLPSQSAFPSLVSPRTQFNSMNMLGNVPSVSSLLNQSFGNGVPNSGPSGIGSSQRGGIDPASELDPFSLVGNGVSFNNTSSSFVTSNTANPVSSSQVSGPQFSNHSSGQMLPNQQKSQQTETQNFQHSQHSMQQFCTSNNTQQQQQQFQQIRGGLSGIGHVKLEPQMSNNDLQGQQLQQQQQLQSMRNLGPVKLEPQQLQSMRNLGPVKLEPQHSDPSLFLQQQQQQQQFLNMSRQSPQAAAAQINLLHQQRLLQLQQHHQQQLFKALPQQRPHLPQQFQQQSLPLRSPVKPIYEPGMCARRLTHYMYQQQHKPEDNNIEFWRKFVAEYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNASGQIVLDYAKAIQESIFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNVSSNLSTPELQSNCNTFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSQETATGPIESLTKFPRRTNASPGFHSQVQNAEQQLSQPQKTIDQNANIDQSSVQGAAIQLVGQNANNGVTSANNAVNQASTSSSASTIVGLLHQNSMNSRQPNSISASSPYAGNSTQISSPGSSTTIAPAQANPSFQSPALSSSNNPPQSSLGAATATNHTSTTNSPANVSLQQQPTHSFEADQGDSQSSVQKIIQEYMMSNQLNGMSPMTAVSSLGNDVKTVNGMLPTSNIMGLNGTASGVSCNGSTGYGSMGGGLAQASMINGMRSAMGNNSISNGRIGMASLAREQSTNHQDLGNQLLNGLGAINGFNNNLQFDY 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36766478 36783973 + evm.model.ptg000002l.257 HCH12g1402 556249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1402 896 MobiDBLite consensus disorder prediction 595 619 - -
HCH12g1402 896 PANTHER LIM DOMAIN-BINDING PROTEIN 1 892 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
HCH12g1402 896 MobiDBLite consensus disorder prediction 675 768 - -
HCH12g1402 896 MobiDBLite consensus disorder prediction 249 268 - -
HCH12g1402 896 MobiDBLite consensus disorder prediction 71 97 - -
HCH12g1402 896 MobiDBLite consensus disorder prediction 9 41 - -
HCH12g1402 896 MobiDBLite consensus disorder prediction 241 268 - -
HCH12g1402 896 MobiDBLite consensus disorder prediction 71 85 - -
HCH12g1402 896 Pfam LIM-domain binding protein 335 589 IPR029005 -
HCH12g1402 896 MobiDBLite consensus disorder prediction 1 41 - -
HCH12g1402 896 MobiDBLite consensus disorder prediction 117 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1402 HCH-Chr12:36766478 HCH5g0778 HCH-Chr5:5962685 5.60E-93 dispersed
HCH12g1402 HCH-Chr12:36766478 HCH13g0189 HCH-Chr13:1266322 3.80E-291 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1402 - - - 0.0