Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1403 ATGTCTCGATCGCTAGTGCAGCCGGTCGGACAGAAGAGGCTGACGAACGTGGCTGTGGTCCGTTTGAAAAAACTAGGTCTTCGTTTCGAGATTGCCTGTTTCAAAAACAAGGTTCTTTCTTGGCGCTCTGGCGTGGAAAAAGATCTGGATGAGGTGTTGCAATCACATATTGTTTATTCAAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAAGATTTGAAGGCAGCTTTTGACACAGATGATCAGACTACAATTTGTTTGAAGATTCTACAGGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGATTCTCAATTATCTAGTCAGTTTCGTGATATTGCAACCATTGTTATGCAGAAGACATTCAATCCGGAAACTAAACGCCCTTACACCATTAACATGATTGAGAGGCTGATGCGTGAAATTCATTTTGCTGTTGATCCGCATCACAGCTCAAAGAAACAGGCACTGGAGGTCATTCAAGAGCTTCAAAAGCACTTCCCAATTAAACGTTCACCAATGAAAATACGATTTACTGTACCTGAACAGAACCTTCCACCTCTTCGTGAGAAGTTAAATGGCTGGAATGCTAGTATTGTTTCAAATGATGGATTTGGAAATCAGCAACATGTTGTTTGCGAATTGGATCCTAGCTTTTATCGGGAGTGTAATCCCTTAATGACTGAACTGCAAGGAAGATCTGAAGTGCTCTCCTTCGGTTTGCATGAGGAAGGTGATGCCAATATGGATGAATATGATGGTGATCATGAGCATGTTGAATTACCTCCAAGGCAAATTAAGGAATCATCTGTTTCTCAGCTAAGTGAAACATTACAAAAACAAAGTATCTTCGTTGATGGTGGGAATGCCCAGACTGGGGGAAAGCGCTGTAGCACATGTAACGTATTTGTGGGGGATTCCAGTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAACATAATGTAAAGCGCAAAACCAAGAATCTCCCGCCTCTGACTGAAGACGAGTGCATGGTAGAAGCGGAATTGGGTGATTCGAATTCAGATTTGAAGGATTATTCATTTTAA 1071 41.55 MSRSLVQPVGQKRLTNVAVVRLKKLGLRFEIACFKNKVLSWRSGVEKDLDEVLQSHIVYSNVSKGVLAKTKDLKAAFDTDDQTTICLKILQEGELQIAGKERDSQLSSQFRDIATIVMQKTFNPETKRPYTINMIERLMREIHFAVDPHHSSKKQALEVIQELQKHFPIKRSPMKIRFTVPEQNLPPLREKLNGWNASIVSNDGFGNQQHVVCELDPSFYRECNPLMTELQGRSEVLSFGLHEEGDANMDEYDGDHEHVELPPRQIKESSVSQLSETLQKQSIFVDGGNAQTGGKRCSTCNVFVGDSSQFREHHKSEWHKHNVKRKTKNLPPLTEDECMVEAELGDSNSDLKDYSF 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36784716 36788517 - evm.model.ptg000002l.256 HCH12g1403 556250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1403 356 Pfam SBDS protein, C-terminal domain 174 238 IPR046928 -
HCH12g1403 356 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
HCH12g1403 356 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 247 IPR039100 -
HCH12g1403 356 Gene3D - 174 250 - -
HCH12g1403 356 NCBIfam ribosome assembly factor SBDS 13 228 IPR002140 GO:0042256(InterPro)
HCH12g1403 356 SUPERFAMILY FYSH domain 13 96 IPR036786 -
HCH12g1403 356 SUPERFAMILY beta-beta-alpha zinc fingers 286 326 IPR036236 -
HCH12g1403 356 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254(InterPro)
HCH12g1403 356 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
HCH12g1403 356 Gene3D - 100 172 IPR037188 -
HCH12g1403 356 Gene3D - 1 96 IPR036786 -
HCH12g1403 356 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
HCH12g1403 356 FunFam SBDS, ribosome maturation factor 3 96 - -
HCH12g1403 356 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
HCH12g1403 356 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
HCH12g1403 356 FunFam SBDS, ribosome maturation factor 100 172 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1403 K14574 - csv:101215380 579.711