Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1405 ATGTCTCTGGTGAGACCAACTGATCCATCTCCATTGTCGTATGGAAGTCGCAAGCTTTACTCGTTAAAGGGAACAAAGAATACTCCTGACTTATCCACCCAAACATTTGGTTCTGGAAAGCATAACACAATGTATATGAATGATTTATATAGCAGTGAGAGCTACGAGAAGTATTTCCTTGACTTTCCAACAGAGGAGTTATCCTATTACCCAGATGCTGCCTCTTATGAGCTAAGAGTTGACTCTCTATCCCCCATGCATGGTTCATTTAATCTTTTTGATGCGTATCAATCGAACTCAGATTCAGGTTGTGTAGAGAGTACAAGCCCAGATCCAGTAGACTATGATGATGGTCTAGTGAGGTTAAAATTACAAGAATTAGAGAGAGATCTGTTCGCTGATACCGATGCTGCTGATTTTGATGAGGAAATGTTTGCCAATGGCCAAAGCATGGAAATTGATGGCCAATGGGCAAATTCAATTCAAGATGCACTGCTTCATGACTCGCCGAAAGAATCTTCATCAACAGATTCTAATTTCAGTAGTAGCAGCAGTAATAAGGATGCGTCACAATTATCTTCACAGAATTACAGACAAATGCTTGTACACTGTGCTGCTGCTATCGCAGATGGAAACATCGAAGAAGCATCAACCATGATAGATCAACTCCGACAGATGGTCTCTGTGCAAGGAGATCCACCACAGAGGATTGCAGCATACATGGTTGAAGGTCTTGCTGCTCGGATATTAGAATCGGGAAAATGTCTTTATAAAGCTTTGAAATGCAAAGAACCCCCTTCCTCTGACCGTCTTGCCGCTATGCAGATTCTTTTTGAAGTCTGCCCTTGTTTCAAATTTGGCTTTATGGCAGCAAATTGTGCCATTATAGAAGCATCGAAAGATGAGAAGAGAATTCATATAGTGGATTTCGATGTAAGCCAGGGAACTCAGTACATCAAATTGATTCAAATGTTAGCAGCTCAGCCAGGTAAGCCACCACAATTGAGGTTAACAGGGATTGATGACCACGAATCAGTACAACGCCCCATTGGAGGTCTTAAACACATTGGACAACGGCTTGAGCAGCTGGCAGAAGCACTGCAGGTTCCATTTGAATTTCGAGCAGTTGCCTCAAAGACCTCAGTTGTCAGTCCCTCAATGCTCGGCTGCCGTCCTGGAGAAGCACTTATAGTAAACTTTGCATTTTTGCTTCACCACATGCCTGATGAAAGTGTGTCAACAGTAAATCTAAGAGACCAGCTTCTTCGAATGGTTAAGAGCTTGAATCCGAAACTGGTAACAGTCGTTGAACAGGATATGAACACCAACACCACCCCATTTTACTCTAGATTTATTGAAGCCTACAATTATTATTCAGCAGTTTTCGATTCTCTCGATGCAACTCTCCCGAGAGAGAGTCAGGACAGAATGAATGTTGAAAGGCAATGCTTGGCGAGGGACATAGTCAACATTGTAGCTTGTGAAGGTGAAGAAAGAATAGAGAGATATGAAGTTGCTGGTAAATGGAGGGCAAGAATGACAATGGCTGGCTTCACTTCTTCTCCGATGAGCGAAAACGTGACCGACTCTATCAGTAAACTTATCAAGGAGTATTGTGATAGGTACAAGATGGAGGAGGAAAAGGGCACTCTACATTTTGGGTGGGAAGAAAAAAGTTTGATTGTTGCTTCAGCATGGAGGTGA 1704 42.49 MSLVRPTDPSPLSYGSRKLYSLKGTKNTPDLSTQTFGSGKHNTMYMNDLYSSESYEKYFLDFPTEELSYYPDAASYELRVDSLSPMHGSFNLFDAYQSNSDSGCVESTSPDPVDYDDGLVRLKLQELERDLFADTDAADFDEEMFANGQSMEIDGQWANSIQDALLHDSPKESSSTDSNFSSSSSNKDASQLSSQNYRQMLVHCAAAIADGNIEEASTMIDQLRQMVSVQGDPPQRIAAYMVEGLAARILESGKCLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEASKDEKRIHIVDFDVSQGTQYIKLIQMLAAQPGKPPQLRLTGIDDHESVQRPIGGLKHIGQRLEQLAEALQVPFEFRAVASKTSVVSPSMLGCRPGEALIVNFAFLLHHMPDESVSTVNLRDQLLRMVKSLNPKLVTVVEQDMNTNTTPFYSRFIEAYNYYSAVFDSLDATLPRESQDRMNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSSPMSENVTDSISKLIKEYCDRYKMEEEKGTLHFGWEEKSLIVASAWR 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36902257 36903960 - evm.model.ptg000002l.254 HCH12g1405 556252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1405 567 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 183 566 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH12g1405 567 ProSiteProfiles GRAS family profile. 188 567 IPR005202 -
HCH12g1405 567 MobiDBLite consensus disorder prediction 168 189 - -
HCH12g1405 567 Pfam GRAS domain family 198 567 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1405 HCH-Chr12:36902257 HCH6g0857 HCH-Chr6:43379011 8.70E-116 dispersed
HCH12g1405 HCH-Chr12:36902257 HCH2g0668 HCH-Chr2:50476335 3.60E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32739 PF03514 GRAS 1.20E-134 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1405 K27748 - csv:101206511 890.952