Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1415 ATGACAAAGATGAGGAATCGGGTTTCTTTTATCGTCAATGTTTTCGTATTTTGTGCTTTATTCTCATTGCTTGGCGAAAAATCAATGGTAGAAGCAGAAGAAGAACAAACCAAGGTTTACATCGTTTACCTTGGAGAAAGCCAATTTAGTAGTAGTAAATTGGCAACCGAATCTCACCACGATTTGCTTTCTACTACATTGGGAAGCAAGGAGAAGTCATTGAAATCAATGATCTATAGCTATCGACATGGATTTTCCGGGTTTGCGGCTAAGCTCACCAAGTCTCAAGCGCAACACCTAGCTGATAAGCCCGGGGTCGTTCGTGTTATTCCAAACACAATTTACACGTTGCAGACTACTAGGAGTTGGGATTTCCTTGGACTCTCTTCTTCTCATTCCCATTCTTCTAATCTTCTTCATCGTGGTAAAAAGGGTGATGGAGTCATCATAGGCGTCCTCGATACAGGAATTTGGCCGGAGTCGGAAGCTTTTAGCGATAAAGGACTAGGCCCGGTACCAAGTCGATGGAAAGGTATATGTGAAACCGGAGATCAATTCAATTCCACAAACTGCAACAGAAAAATCATCGGTGCTCGTTGGTACTCTAGTTTGCTTGAGGCCGAGTTCCCTCCGGGATCGAACGACACCATAATGGACGAGTACTTATCTGCAAGAGATTTCAATGGACATGGAACACACGCAGCGAGCACCGCCGCAGGTTCTTTGGTTGAAAATGTAAGCTACAGAAATCTAGGATTTGGTACGATGAGAGGCGGAGCACCACATGCTCGTTTAGCAATATACAAGGTTTGTTGGGGCCGGACGGGTGAATGCTCAACGGCTGATATATTGAAAGCCATTGATGAAGCAATTCATGACGGCGTTGATGTTTTATCTCTCTCACTTGGTAAAGCGGTTCCATTGTTCCCTGAGTTTGATGAAAATAATGGAGTTGCGATTGGTTCATTCCATGCGACAGCAAGAGGTATTTCTGTTGTCTGTGCTGCTGGTAACGATGGCCCTACTTCACAGACAGTATTTAACGTGGCACCTTGGGTTTTGACTGTTGCTGCAAGTTCCATGGATAGAGCTTTTCTTGCTCCTATTACTCTAGGAGACAATTCTACTTTTCTGGGTCAAAGCTTATTCAGTGGGATGAACATTAAGAGTGGATTGACATATCCAAATTCCAAAGGATTGGACCCCAGCATTGCAGGTATTTGCGAGGGAATATCAGTAAATGATACTTCCATACGTGGAAAAGTAGTGCTTTGCTTTGCTCACTTAGCTGACAGCAACGCTGTAGCGAAAGCTTTTGTGGCTGTGAGAGGAGCAAATGGAATTGGACTAATCGTCGCTGGACAACATGATGATATCTTGTTTTCGTGTGGTGATGACTTTCCATGCATTGTGGTTGACTCTGAGATTGGCACCAAAATATACTTTTACATCCGGGCAAATAGTAATCCACAAGTAAAGTTGAGCTCTTCAAGAACCATAGTGGGGAAGCCTATATCAGCCCACATTGCCTCTTTCTCATCCAGAGGTCCAAATTCCGTTGCATCTGCAATTCTCAAGCCAGAAATAGCCGCACCAGGAGCAAATATTTTAGCTGCAACTTCACCTGATGACCCATTTAGTGATAATGGTTATGGAATTCAATCAGGGACTTCAATGGCAACACCTCATATTTCAGGCATTGTGGCTCTTCTTAAATCATTACATCCGACTTGGTCACCTTCTGCCATTAAATCAGCCCTCATCACAACTGCATGGAAAACTCATCCGTCAGGACTACCAATATTTGCTACGGGATCTCCTCCTAAAATCGCTGATCCATTTGACTATGGAGGTGGAATAGTCAATCCAAATGCTGCTGGAAACCCAGGACTCGTTTATGATATGAGTATTACAGATTATGTATTTTACCTCTGCTCAATGGGTTATAACAACTCAGTCATTTCTCTCTTAACACAAGAAAAAACAAACTGCCCACATCAGAAACCATCAATATTGGATGTTAACTTACCTTCCATCACAATTCCAACACTTAGAAACTCGACGACCGTTACTCGAACAGTTACGAATGTCGGAAATTCAACGTCGATTTATAAGGCTTTGATTAAGCCACCACCTGGGACAAAGGTAAGTGTTGAACCAAATGTATTGATCTTCAATTCCCAAGTTAGGAAATTGTCTTTCAAGGTTACGTTTTCAACAGCCCTACGAAGGAACTACGGATTTTCTTTTGGAAGCCTCACTTGGACTGATGGAGTGTATGTTGTCAATAGTCCTTTGTCTGTTAGAACTGATTTCCTCTAG 2322 42.72 MTKMRNRVSFIVNVFVFCALFSLLGEKSMVEAEEEQTKVYIVYLGESQFSSSKLATESHHDLLSTTLGSKEKSLKSMIYSYRHGFSGFAAKLTKSQAQHLADKPGVVRVIPNTIYTLQTTRSWDFLGLSSSHSHSSNLLHRGKKGDGVIIGVLDTGIWPESEAFSDKGLGPVPSRWKGICETGDQFNSTNCNRKIIGARWYSSLLEAEFPPGSNDTIMDEYLSARDFNGHGTHAASTAAGSLVENVSYRNLGFGTMRGGAPHARLAIYKVCWGRTGECSTADILKAIDEAIHDGVDVLSLSLGKAVPLFPEFDENNGVAIGSFHATARGISVVCAAGNDGPTSQTVFNVAPWVLTVAASSMDRAFLAPITLGDNSTFLGQSLFSGMNIKSGLTYPNSKGLDPSIAGICEGISVNDTSIRGKVVLCFAHLADSNAVAKAFVAVRGANGIGLIVAGQHDDILFSCGDDFPCIVVDSEIGTKIYFYIRANSNPQVKLSSSRTIVGKPISAHIASFSSRGPNSVASAILKPEIAAPGANILAATSPDDPFSDNGYGIQSGTSMATPHISGIVALLKSLHPTWSPSAIKSALITTAWKTHPSGLPIFATGSPPKIADPFDYGGGIVNPNAAGNPGLVYDMSITDYVFYLCSMGYNNSVISLLTQEKTNCPHQKPSILDVNLPSITIPTLRNSTTVTRTVTNVGNSTSIYKALIKPPPGTKVSVEPNVLIFNSQVRKLSFKVTFSTALRRNYGFSFGSLTWTDGVYVVNSPLSVRTDFL 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37458303 37463378 - evm.model.ptg000002l.244 HCH12g1415 556262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1415 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 556 566 IPR023828 -
HCH12g1415 773 Gene3D Peptidase S8/S53 domain 147 640 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH12g1415 773 Pfam Subtilase family 145 592 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH12g1415 773 Gene3D - 362 501 - -
HCH12g1415 773 Gene3D - 644 771 - -
HCH12g1415 773 SUPERFAMILY Subtilisin-like 38 702 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH12g1415 773 CDD PA_subtilisin_like 369 494 - -
HCH12g1415 773 FunFam Subtilisin-like protease SBT1.5 644 771 - -
HCH12g1415 773 FunFam Subtilisin-like protease SBT5.3 28 118 - -
HCH12g1415 773 Pfam Peptidase inhibitor I9 39 118 IPR010259 -
HCH12g1415 773 PRINTS Subtilisin serine protease family (S8) signature 226 239 IPR015500 -
HCH12g1415 773 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
HCH12g1415 773 PRINTS Subtilisin serine protease family (S8) signature 555 571 IPR015500 -
HCH12g1415 773 Pfam Fibronectin type-III domain 673 768 IPR041469 -
HCH12g1415 773 CDD Peptidases_S8_3 115 592 IPR034197 -
HCH12g1415 773 FunFam Subtilisin-like protease SBT1.5 147 371 - -
HCH12g1415 773 ProSiteProfiles Serine proteases, subtilase domain profile. 122 627 - -
HCH12g1415 773 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 39 765 IPR045051 -
HCH12g1415 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 25 118 IPR037045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1415 HCH-Chr12:37458303 HCH14g1025 HCH-Chr14:37448572 1.80E-148 dispersed
HCH12g1413 HCH-Chr12:37403770 HCH12g1415 HCH-Chr12:37458303 1.70E-66 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1415 - - - 0.0