Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1439 | ATGGACATCGACCAGATGCCGGAAAATCCCCACCGTGGTTCCCACCACCGCCGATCCCACTCCGACACTTCTTTCCGTTTCCAAAATCTCGATGATCTTCTCTTCTTCGACCCATCAGAGCTTGATCTTTCAATTCTTTCTTCTCCTACTGCTACTCCTCCTCCCCCTCTTCCTCCTATGGCCATCGATTCTTCAAATTCTAAGTCTTCTGATGAAACCCTTTTCCCCAAACCGGAACCCAATCTCTCCGGTGGGTCACGTGGTAGTCACGTGCGAAGTTTATCTATGGATTCCGATTTCTTCGATAATCTTAGCCTCACCGGAGATAGCCGGGAAAAGAGAGAAATTCGTCATAGACATAGTTTTTCTATGGATGGGTCTTCTTCATCTTTTGAAGCTGATTCAGTGATGGATGGAATGAAGAAAGCTATGGATCCTCATAAACTTGCTGAACTTGCTTTGATTGATCCCAAAAGAGCTAAAAGAATTCTTGCTAATAGACAATCTGCTGCTCGTTCGAAAGAGAGGAAAGTACGGTATACGAGCGAGCTCGAGAGGAAGGTTCAGACATTGCAGTCCGAAGCGACGACTCTCTCGGCGCAGGTGACGATGCTACAGAGAGATACTACTGGATTAACAACAGAGAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAGCAAGCACATCTCAGGGATGCTCTGAACGAAACTCTAAGGGAAGAAGTTCAGCGGCTTAAAATAACAGCCAGTCATGTTGCAGCTATCAATGGAAACCCTTTCAACAGACCTCCACAGTATCCATCATCCCAGCCAGGTTTACACCATTTGAATAACTCCCACCCCCAACAGGGTCAACAGCAACAAACCATCTCGTTCACAAACCCGCAATCTGCAGACTCTCAGTGGACAGCGTCGTCCCAGCTTCTCAGTCGTCAATCGGACAGCCAAGCAAAACCTTAG | 966 | 47.0 | MDIDQMPENPHRGSHHRRSHSDTSFRFQNLDDLLFFDPSELDLSILSSPTATPPPPLPPMAIDSSNSKSSDETLFPKPEPNLSGGSRGSHVRSLSMDSDFFDNLSLTGDSREKREIRHRHSFSMDGSSSSFEADSVMDGMKKAMDPHKLAELALIDPKRAKRILANRQSAARSKERKVRYTSELERKVQTLQSEATTLSAQVTMLQRDTTGLTTENKELKLRLQAMEQQAHLRDALNETLREEVQRLKITASHVAAINGNPFNRPPQYPSSQPGLHHLNNSHPQQGQQQQTISFTNPQSADSQWTASSQLLSRQSDSQAKP | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 38690895 | 38693345 | - | evm.model.ptg000002l.220 | HCH12g1439 | 556286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1439 | 321 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 156 | 219 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g1439 | 321 | SUPERFAMILY | Leucine zipper domain | 158 | 210 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g1439 | 321 | SMART | brlzneu | 154 | 218 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g1439 | 321 | MobiDBLite | consensus disorder prediction | 44 | 93 | - | - | |
HCH12g1439 | 321 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
HCH12g1439 | 321 | MobiDBLite | consensus disorder prediction | 257 | 321 | - | - | |
HCH12g1439 | 321 | FunFam | Transcription factor VIP1 | 157 | 210 | - | - | |
HCH12g1439 | 321 | CDD | bZIP_plant_RF2 | 159 | 208 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g1439 | 321 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 3 | 298 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH12g1439 | 321 | Gene3D | - | 157 | 234 | - | - | |
HCH12g1439 | 321 | MobiDBLite | consensus disorder prediction | 263 | 321 | - | - | |
HCH12g1439 | 321 | MobiDBLite | consensus disorder prediction | 62 | 76 | - | - | |
HCH12g1439 | 321 | Pfam | bZIP transcription factor | 158 | 216 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g1439 | 321 | Coils | Coil | 181 | 229 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1439 | HCH-Chr12:38690895 | HCH1g0287 | HCH-Chr1:45381096 | 1.80E-41 | dispersed | |
HCH10g0052 | HCH-Chr10:437899 | HCH12g1439 | HCH-Chr12:38690895 | 4.30E-43 | transposed | |
HCH2g0977 | HCH-Chr2:53076680 | HCH12g1439 | HCH-Chr12:38690895 | 3.90E-35 | transposed | |
HCH12g1439 | HCH-Chr12:38690895 | HCH13g0227 | HCH-Chr13:1497514 | 2.50E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32740 | PF00170 | bZIP_1 | 2.90E-08 | CL0018 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1439 | K20557 | - | csv:101207973 | 403.675 |