Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1439 ATGGACATCGACCAGATGCCGGAAAATCCCCACCGTGGTTCCCACCACCGCCGATCCCACTCCGACACTTCTTTCCGTTTCCAAAATCTCGATGATCTTCTCTTCTTCGACCCATCAGAGCTTGATCTTTCAATTCTTTCTTCTCCTACTGCTACTCCTCCTCCCCCTCTTCCTCCTATGGCCATCGATTCTTCAAATTCTAAGTCTTCTGATGAAACCCTTTTCCCCAAACCGGAACCCAATCTCTCCGGTGGGTCACGTGGTAGTCACGTGCGAAGTTTATCTATGGATTCCGATTTCTTCGATAATCTTAGCCTCACCGGAGATAGCCGGGAAAAGAGAGAAATTCGTCATAGACATAGTTTTTCTATGGATGGGTCTTCTTCATCTTTTGAAGCTGATTCAGTGATGGATGGAATGAAGAAAGCTATGGATCCTCATAAACTTGCTGAACTTGCTTTGATTGATCCCAAAAGAGCTAAAAGAATTCTTGCTAATAGACAATCTGCTGCTCGTTCGAAAGAGAGGAAAGTACGGTATACGAGCGAGCTCGAGAGGAAGGTTCAGACATTGCAGTCCGAAGCGACGACTCTCTCGGCGCAGGTGACGATGCTACAGAGAGATACTACTGGATTAACAACAGAGAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAGCAAGCACATCTCAGGGATGCTCTGAACGAAACTCTAAGGGAAGAAGTTCAGCGGCTTAAAATAACAGCCAGTCATGTTGCAGCTATCAATGGAAACCCTTTCAACAGACCTCCACAGTATCCATCATCCCAGCCAGGTTTACACCATTTGAATAACTCCCACCCCCAACAGGGTCAACAGCAACAAACCATCTCGTTCACAAACCCGCAATCTGCAGACTCTCAGTGGACAGCGTCGTCCCAGCTTCTCAGTCGTCAATCGGACAGCCAAGCAAAACCTTAG 966 47.0 MDIDQMPENPHRGSHHRRSHSDTSFRFQNLDDLLFFDPSELDLSILSSPTATPPPPLPPMAIDSSNSKSSDETLFPKPEPNLSGGSRGSHVRSLSMDSDFFDNLSLTGDSREKREIRHRHSFSMDGSSSSFEADSVMDGMKKAMDPHKLAELALIDPKRAKRILANRQSAARSKERKVRYTSELERKVQTLQSEATTLSAQVTMLQRDTTGLTTENKELKLRLQAMEQQAHLRDALNETLREEVQRLKITASHVAAINGNPFNRPPQYPSSQPGLHHLNNSHPQQGQQQQTISFTNPQSADSQWTASSQLLSRQSDSQAKP 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38690895 38693345 - evm.model.ptg000002l.220 HCH12g1439 556286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1439 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 156 219 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1439 321 SUPERFAMILY Leucine zipper domain 158 210 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1439 321 SMART brlzneu 154 218 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1439 321 MobiDBLite consensus disorder prediction 44 93 - -
HCH12g1439 321 MobiDBLite consensus disorder prediction 1 23 - -
HCH12g1439 321 MobiDBLite consensus disorder prediction 257 321 - -
HCH12g1439 321 FunFam Transcription factor VIP1 157 210 - -
HCH12g1439 321 CDD bZIP_plant_RF2 159 208 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1439 321 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 3 298 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH12g1439 321 Gene3D - 157 234 - -
HCH12g1439 321 MobiDBLite consensus disorder prediction 263 321 - -
HCH12g1439 321 MobiDBLite consensus disorder prediction 62 76 - -
HCH12g1439 321 Pfam bZIP transcription factor 158 216 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1439 321 Coils Coil 181 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1439 HCH-Chr12:38690895 HCH1g0287 HCH-Chr1:45381096 1.80E-41 dispersed
HCH10g0052 HCH-Chr10:437899 HCH12g1439 HCH-Chr12:38690895 4.30E-43 transposed
HCH2g0977 HCH-Chr2:53076680 HCH12g1439 HCH-Chr12:38690895 3.90E-35 transposed
HCH12g1439 HCH-Chr12:38690895 HCH13g0227 HCH-Chr13:1497514 2.50E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32740 PF00170 bZIP_1 2.90E-08 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1439 K20557 - csv:101207973 403.675