Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1440 | ATGACCACAATCAACCAAAACTCCATCGAAAATGGCAAATTCACTATAGCACCTCATAACAATACCATTCAAGAGCAACAAATTACTAATACAGAAATTGAAACCAAACCATTCGATTATTCGAAACGTGCCCAATGGCTACGTGCTGCCGTTCTTGGAGCCAACGACGGGTTAGTATCCACAGCCTCTTTAATGATGGGAATTGGTGCCGTTAAACAAGATATCAAAGCTATGATACTCACCGGGTTTGCCGGGTTGGTGGCTGGAGCATGCAGCATGGCCATCGGTGAGTTTGTATCTGTTTACTCACAGTTGGATATAGAGATAGCTCATATAAAAAGAAAGGAGGAGAGAATGGAAGATCATGGTGATGATATCAAGGAAGTGGAAGAGAGCGAAAGCTTGCCGAACCCGCTGCAAGCGGCAGCGGCTTCGGCTTTGGCGTTTTCATTGGGGGCAATAGTTCCACTGCTATCGGCTTCCTTTATAAGGGAGTACAAAGTCAGGCTAGGAGTGGTGGTGGCTGCCGTGACTTTGGCTCTTGTGAGTTTTGGCTGGCTTGGGGCTGTGCTTGGAAAGGCCCCTAGGGTTAGGTCAGTTATCAGGGTTCTTATTGGAGGTTGGCTGGCTATGGCTGTAACCTTTGGATTAACTAAGTTAATTGGCTCAAGTGGTCTGTAG | 681 | 46.55 | MTTINQNSIENGKFTIAPHNNTIQEQQITNTEIETKPFDYSKRAQWLRAAVLGANDGLVSTASLMMGIGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEIAHIKRKEERMEDHGDDIKEVEESESLPNPLQAAAASALAFSLGAIVPLLSASFIREYKVRLGVVVAAVTLALVSFGWLGAVLGKAPRVRSVIRVLIGGWLAMAVTFGLTKLIGSSGL | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 38819917 | 38820597 | - | evm.model.ptg000002l.219 | HCH12g1440 | 556287 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1440 | 226 | Pfam | VIT family | 47 | 129 | IPR008217 | GO:0005384(InterPro)|GO:0030026(InterPro) | |
HCH12g1440 | 226 | Pfam | VIT family | 130 | 218 | IPR008217 | GO:0005384(InterPro)|GO:0030026(InterPro) | |
HCH12g1440 | 226 | Coils | Coil | 112 | 132 | - | - | |
HCH12g1440 | 226 | PANTHER | FE(2+)/MN(2+) TRANSPORTER PCL1 | 17 | 223 | IPR008217 | GO:0005381(PANTHER)|GO:0005384(InterPro)|GO:0005384(PANTHER)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(InterPro)|GO:0030026(PANTHER) | |
HCH12g1440 | 226 | CDD | Nodulin-21 | 45 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1440 | HCH-Chr12:38819917 | HCH4g1713 | HCH-Chr4:20952363 | 9.20E-61 | dispersed | |
HCH12g1440 | HCH-Chr12:38819917 | HCH13g0228 | HCH-Chr13:1507423 | 1.60E-76 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1440 | K22736 | - | csv:101210510 | 298.13 |