Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1440 ATGACCACAATCAACCAAAACTCCATCGAAAATGGCAAATTCACTATAGCACCTCATAACAATACCATTCAAGAGCAACAAATTACTAATACAGAAATTGAAACCAAACCATTCGATTATTCGAAACGTGCCCAATGGCTACGTGCTGCCGTTCTTGGAGCCAACGACGGGTTAGTATCCACAGCCTCTTTAATGATGGGAATTGGTGCCGTTAAACAAGATATCAAAGCTATGATACTCACCGGGTTTGCCGGGTTGGTGGCTGGAGCATGCAGCATGGCCATCGGTGAGTTTGTATCTGTTTACTCACAGTTGGATATAGAGATAGCTCATATAAAAAGAAAGGAGGAGAGAATGGAAGATCATGGTGATGATATCAAGGAAGTGGAAGAGAGCGAAAGCTTGCCGAACCCGCTGCAAGCGGCAGCGGCTTCGGCTTTGGCGTTTTCATTGGGGGCAATAGTTCCACTGCTATCGGCTTCCTTTATAAGGGAGTACAAAGTCAGGCTAGGAGTGGTGGTGGCTGCCGTGACTTTGGCTCTTGTGAGTTTTGGCTGGCTTGGGGCTGTGCTTGGAAAGGCCCCTAGGGTTAGGTCAGTTATCAGGGTTCTTATTGGAGGTTGGCTGGCTATGGCTGTAACCTTTGGATTAACTAAGTTAATTGGCTCAAGTGGTCTGTAG 681 46.55 MTTINQNSIENGKFTIAPHNNTIQEQQITNTEIETKPFDYSKRAQWLRAAVLGANDGLVSTASLMMGIGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEIAHIKRKEERMEDHGDDIKEVEESESLPNPLQAAAASALAFSLGAIVPLLSASFIREYKVRLGVVVAAVTLALVSFGWLGAVLGKAPRVRSVIRVLIGGWLAMAVTFGLTKLIGSSGL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38819917 38820597 - evm.model.ptg000002l.219 HCH12g1440 556287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1440 226 Pfam VIT family 47 129 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
HCH12g1440 226 Pfam VIT family 130 218 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
HCH12g1440 226 Coils Coil 112 132 - -
HCH12g1440 226 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 17 223 IPR008217 GO:0005381(PANTHER)|GO:0005384(InterPro)|GO:0005384(PANTHER)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(InterPro)|GO:0030026(PANTHER)
HCH12g1440 226 CDD Nodulin-21 45 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1440 HCH-Chr12:38819917 HCH4g1713 HCH-Chr4:20952363 9.20E-61 dispersed
HCH12g1440 HCH-Chr12:38819917 HCH13g0228 HCH-Chr13:1507423 1.60E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1440 K22736 - csv:101210510 298.13