Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1441 ATGGGTCGAAAGAAGCCGACGGCACGAGACGACGACGGTGTGGCTCAGGGCGGCGGAGGTAAGTCGAAGAAAAAGACATTTGTTTTAGATGATGATGAATATTCTGTTGGAACTGAATTGTCTGAAGAGAGTCAAGTTCAGGAGGAGAAAGTTGTGATAACGGGGAAGAAGAAGGGTAAGAAGGGAAATTCAAAAGCTTCACAATTTAACGAGGAGGGTGATGAGGATGGTGATGATGATAAAGTTTCGGAAATTGTTATTACTGGGAAGAAGAAGAGTAAGTCGAAGAAGGGGGGAAGTAGTAGCAGTGGTTTTACTGCTTCCGGTTTCGGGTTACTTGAGGAGGAGGGAGAGGATGATGATGATCAATCTGCTTTAACTGGAGAGAAGGATGATGACGAAAGGGATGATTCGCCAATTAGTTTTGCTGGTAAGAAGAAGTCCAAGGCTTTGAAAAAGAGTGGTTTTTCTGCGGTGTCGGCTTTTGATGCCCTTGATGATGAGAATGATGGAGATGTGATTGATAATGAGATTGTAGATGAAGAAGAAGATATTAGGGAAGAGCCTGTTATTGCATTTACGGGGAAGAAGAAGTCATCAAAGAGTGGTAAGAAGGCTGGAAGTACATTTGCAGCTACCAGTTTTAGTGGGCTTGATGATGAGGATGAGGATGGAAATGTTCATAAAGTTGAAGAGGATGAAGATATTACTTCAATTAGCTTCTCGGGCAAGAAAAAGAAGTCATCTAAGGCTTCGAAGAAAAGTGCCCATTCGTTTAGTGCTGCTGCATTTGCTGATGAGGAAAATGAGGGTGATGCTTCTATTTCTGAGCCAAATAAATTAAATGACGATGGTGTTGATGATGAAGATGCCTCAGTTATTGCATTTTCAGGCAAGAAAAAATCTTCAAAGAAAAAAAGCAACAATTCTTTTACTGTGGTAGGTGATGGAAGTGAGCTAGGGAGTGAAGTAAGAGACGCAGTCGTGTCTGAAACACTTAACACAGGAACTAGCAACTTCGATTTTGATGCCACTAAAGCTAACAAGGTTGAAGGGGTGGCAGAAACTTCAAAAAATAAAAAGAAAAAGAAGAAGAGTGGAAGGAGTGCTCAAGAAGAAGATGATTTGGATAAGCTTCTTGCTGAGCTAGGAGAGGGGCCATCGTTATCAAAATCAGCTGCACCTCCTCCTCTTCCTTCACAAGAGGATAATGTTGAGAATCCACCTGAGCTTGTAGCTCCTCTTGATGCACCAGCTGAGAAGGAAGATGAAGAAGATACTATGGAATCGGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAGGAAAAAAAGGCAGCAGCAGCGGCAGCGGCAGTTGTCGCAGAGGGGAATGATAAGAAGATGGAGGAAGTAAAGACTGAAATAGTAGAACCCAAAAAAGGTGCTGCAAAGAGTAAAGTGCCAGAGAAGAAAGTGCCAAAGCATGTTAGGGAAATGCAAGAGGCCATGGCTAGGAGAAAAGAAGAAGAAGAACGAAGAAAAAGGGAAGAAGAAGAGAGGTTGCGAAGGGAAGAAGAGGAGAGGCTTAGACAAGAAGAGCTTGAAAGACAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAAAAGCTCCTGCGAAAGAAACAGGAAGGCAAGCTTTTAACAGGGAAGCAAAAAGAAGAACAACGGAGGTTGGAGGCAATGAGAAACCAGATACTAGCAAATGCTGGGGGTTTACCTCAGACTACATCTGACCCTAGTGGACCAGCTAAACGACCAAAATACCAGACAAAGAAGACAAGACCAGGGCATCATCAAGCAAATGGTAGTGCCCAAGCAAAGCTAGTGGAACAAATAGAAGAAAAAATACAAGAAGATGACGTGGCGGAGACCAAATCTTTGGAGCCTGAAAAGATTGAAGATGTGGAGTTGCATCACGTGGAAGAAAAATCAGATGTTGCTGAGGTTATTGAAGATAATGGAATTGAAGAAGATGAAGATGAGAATGAATGGGATGCAAAAAGTTGGGATGATGCTGTCGTGGATCTTTCTTTAAAAAGTGCCTTTGCTGATGAAGAGGTTGATTCAGAGACCGAGATTGGCATGAAAAAAGATAGAAAGAATAGTGCACCGACTTTACAGGATGCAGGTGCCAAGCCAACTGTCCTTGCACAAAAAACTTTACCTTCTCAGCCCAAGAACCAGGATGTAAGAAAAGATGACGCTATTAAGAAAAAAGCCCCAACTCCAGATGCTCCTCCTAAACAACAAGAAGGAAATCTCCGCTCACCCATTTGTTGTATTATGGGCCATGTCGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAAGAGGGTGAGGCTGGAGGTATTACTCAGCAGATTGGGGCCACATATTTTCCTGCCGAGAACATTCGTGAAAGAACTAGGGAACTGAAAGCAGATGCGAAGCTGAAGGTTCCTGGCCTACTTGTTATTGATACCCCTGGGCACGAATCCTTCACAAATTTACGTTCTCGTGGTTCAGGTTTATGCGATATTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCACTTAACCTCTTGAGAATGAGGAACACAGAATTCATTGTTGCTTTGAATAAGGTGGACAGACTTTATGGTTGGAAAACAAATCGCAATGCACCAATACGGAAGACAATGAAGCTGCAATCCAAGGATGTACTATCTGAGTTTGATTCGAAGCTTAATCAGGTTATCACTCAATTTAAAGAACAAGGTTTAAATACCGAATTGTATTATAAAAACAAAGATATGGGAGATTATTTCAATATAGTACCTACAAGTGCTGTTACTGGTGAAGGAATCCCAGACTTGCTATTGTTATTGGTGCAGACTCAGAAAACTATGACTCAGAAACTTATGTTTAGTGATGAAGTGCAGTGTACAGTCTTGGAGGTCAAGGTTGTTGAAGGACATGGGACAACTATTGATGTCATATTGGTCAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGGCCCAATTGTTACTACGATTCGAGCGTTGTTGACACCCCATCCAATGAGGGAACTCCGAGTTAAGGGAACATATCTGCATCATAAGGAAATCAAGGCTGCTCAGGGCATCAAAATTACCGGACAGGGCCTTGAGCATGCTATTGCTGGCACTGCTCTTTATGTCGTAGGTCCCGAGGATGACTTGGAAGACATCATGGAGTCAGCTATGGAAGATATGAAGTCAGTAATGAGCAGGATTGACAAGACTGGTGAGGGAGTCTGTGTCCAAGCATCTACACTAGGTTCTTTGGAAGCGTTGCTGGAGTTTTTGAAATCCCCAGCAGTGAACATTCCTGTTAGTGGAATAAGTATTGGACCTGTTCATAAAAAAGATGTCATGAAAGCTAGTGTGATGCTTGAAAAGAAAAAAGAATATGCCACTATCTTGGCTTTTGATGTTAAAGTGACACCTGAAGCTCGAGAACTTGCTGATGAACTGGGTGTGAAGATTTTTATTGCTGACATCATTTATCACTTGTTCGATCAATTTAAGGCCTATATTGATAATCTTAAGGAGGAAAAAAAGAAGGAAGCTGCTGAGGAAGCAGTCTTCCCTTGTGTTCTCAAGATTTTACCAAATTGCATTTTTAACAAGAAGGATCCAATTGTGTTGGGGGTTGATGTTGTTGAAGGCATTGCCAAGATTGGCACACCAATTTGTATTCCTCAAAGGGAATTTATTGACATTGGTCGCATTGCATCTATTGAAAATAACCATAAACCTGTGGATTATGCAAAGAAAGGGCAGAAGATAGCCATTAAGATAGCTGGGCATTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGATTTGGATGATGAACTTGTCAGCCATATATCAAGGAAGTCCATTGATTTACTCAAAGCCAATTATCGGGATGATTTGTCCATGGATGAGTGGAGACTGTTGGTGAAGTTGAAGAACATTTTCAAGATACAATAA 4074 41.83 MGRKKPTARDDDGVAQGGGGKSKKKTFVLDDDEYSVGTELSEESQVQEEKVVITGKKKGKKGNSKASQFNEEGDEDGDDDKVSEIVITGKKKSKSKKGGSSSSGFTASGFGLLEEEGEDDDDQSALTGEKDDDERDDSPISFAGKKKSKALKKSGFSAVSAFDALDDENDGDVIDNEIVDEEEDIREEPVIAFTGKKKSSKSGKKAGSTFAATSFSGLDDEDEDGNVHKVEEDEDITSISFSGKKKKSSKASKKSAHSFSAAAFADEENEGDASISEPNKLNDDGVDDEDASVIAFSGKKKSSKKKSNNSFTVVGDGSELGSEVRDAVVSETLNTGTSNFDFDATKANKVEGVAETSKNKKKKKKSGRSAQEEDDLDKLLAELGEGPSLSKSAAPPPLPSQEDNVENPPELVAPLDAPAEKEDEEDTMESAAARKKKKKKEKEKEKKAAAAAAAVVAEGNDKKMEEVKTEIVEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRREEEERLRQEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILANAGGLPQTTSDPSGPAKRPKYQTKKTRPGHHQANGSAQAKLVEQIEEKIQEDDVAETKSLEPEKIEDVELHHVEEKSDVAEVIEDNGIEEDEDENEWDAKSWDDAVVDLSLKSAFADEEVDSETEIGMKKDRKNSAPTLQDAGAKPTVLAQKTLPSQPKNQDVRKDDAIKKKAPTPDAPPKQQEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTNRNAPIRKTMKLQSKDVLSEFDSKLNQVITQFKEQGLNTELYYKNKDMGDYFNIVPTSAVTGEGIPDLLLLLVQTQKTMTQKLMFSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMRELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTALYVVGPEDDLEDIMESAMEDMKSVMSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVNIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVVEGIAKIGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIAGHSSEEQQKMYGRHFDLDDELVSHISRKSIDLLKANYRDDLSMDEWRLLVKLKNIFKIQ 1357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38881657 38891671 - evm.model.ptg000002l.218 HCH12g1441 556288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1441 1357 MobiDBLite consensus disorder prediction 580 595 - -
HCH12g1441 1357 Gene3D - 1109 1213 IPR036925 -
HCH12g1441 1357 FunFam Eukaryotic translation initiation factor 5B 1107 1213 - -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 473 572 - -
HCH12g1441 1357 Gene3D Translation factors 1220 1357 - -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 663 678 - -
HCH12g1441 1357 Pfam Translation-initiation factor 2 1096 1206 IPR023115 -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 696 766 - -
HCH12g1441 1357 FunFam Eukaryotic translation initiation factor 5B 1220 1357 - -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 650 680 - -
HCH12g1441 1357 NCBIfam small GTP-binding protein domain 771 895 IPR005225 GO:0005525(InterPro)
HCH12g1441 1357 SUPERFAMILY Translation proteins 1224 1356 IPR009000 -
HCH12g1441 1357 Gene3D - 760 987 IPR027417 -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 473 618 - -
HCH12g1441 1357 CDD IF2_eIF5B 769 984 - -
HCH12g1441 1357 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 766 981 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g1441 1357 MobiDBLite consensus disorder prediction 1 154 - -
HCH12g1441 1357 FunFam eukaryotic translation initiation factor 5B 988 1107 - -
HCH12g1441 1357 Coils Coil 1202 1222 - -
HCH12g1441 1357 CDD aeIF5B_II 989 1099 - -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 352 446 - -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 696 715 - -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 738 753 - -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 113 127 - -
HCH12g1441 1357 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 429 1356 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
HCH12g1441 1357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1056 IPR027417 -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 179 323 - -
HCH12g1441 1357 Coils Coil 488 555 - -
HCH12g1441 1357 Coils Coil 421 452 - -
HCH12g1441 1357 CDD IF2_aeIF5B_IV 1228 1323 - -
HCH12g1441 1357 FunFam Eukaryotic translation initiation factor 5B 760 987 - -
HCH12g1441 1357 PRINTS GTP-binding elongation factor signature 834 844 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g1441 1357 PRINTS GTP-binding elongation factor signature 770 783 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g1441 1357 PRINTS GTP-binding elongation factor signature 886 895 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g1441 1357 PRINTS GTP-binding elongation factor signature 850 861 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH12g1441 1357 MobiDBLite consensus disorder prediction 366 381 - -
HCH12g1441 1357 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1090 1219 IPR036925 -
HCH12g1441 1357 Gene3D Translation factors 988 1108 - -
HCH12g1441 1357 Pfam Elongation factor Tu domain 4 1227 1300 IPR029459 -
HCH12g1441 1357 MobiDBLite consensus disorder prediction 128 143 - -
HCH12g1441 1357 Pfam Elongation factor Tu GTP binding domain 769 975 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1441 HCH-Chr12:38881657 HCH6g0384 HCH-Chr6:7013163 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1441 K03243 - csv:101204360 1749.95