Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1444 | ATGCTGGGTGACTCAAACACTTCTTCTGCTGTCTTAGGCAGCACCGGCGGCGACACCGAAACGGCTCATCGACACGATGGAATCGGTATCGAGGCAGCGGGAGCGGGAGCGGAGGAGAATTCAGGTGAAGATGATAGAGGGAGAGGTGGTGGAGGGGAAGAAGGAGAGAGGAGTTTTGGTGGCAATAGATGGCCGAGACAAGAGACTTTAGCCCTCTTGAAAATACGCTCCGAGATGGACGTGGCTTTTAGGGATGCAAGCGTTAAAGGTCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGAGATCTTGGGTATCATCGAAGTGCAAAGAAATGCAAGGAGAAATTCGAGAATGTTTATAAGTATCACAAAAGAACCAAAGATGTTCGAAGTGGGAAACCAGACAGCAAAACTTATAAGTTTTTTGAACAATTAGAAGCTCTTGATACTCATCCTCCTTCTCTTCATCATCTTCCTCCTCCTCCACCAAATTTTCCGTCTCCTCCGTCGAAGACGGCCGCACCATCACCTCTAGCTGCTACGACAATGGCGGTTCCGCCACAAACTACCGTCATCTCCCACATTCCTTCTACTGTTCCATCGACGACATCCGTACCCCACTTGATGAATATATCATTCTCACAACCAAACCCCACAATTCACCTTCCACAACCGCCTTCTGCCGCTGCTCCACCGCCTTTGACAAACCCTACCAATATAGTTTCCACACCCTTTCCGCCGAATGTTGTTTTGGCAACTCCCACAGTGGCAGCGACGTTTCAGAATATCGAAGCGGATCTCATATCGAACTCGGCGTCGTCGTCTTCGACATCGTCGGACGAGGATGTTGAAGTTTCGAGGCGGAGGAGGAAGAGGAAATGGAAGGACTTTTTCGAGAGATTGATGAGAGAGGTGATCCAGAAGCAAGAGGAAATGCAAAGGAGATTCTTGGAAGCTATTGAGAAAAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAAATGGCTAAAATCAATAGGGAGAGAGAGATTTTAGCTCAAGAGAGATCAATGGCTGCTACCAAAGATGCCGCCATAACATCCTTCTTGCAAAAAATAGCCGAAGGACACCACAACAATAACCCATCACAACCGCCACCGCCACCGCCACCGTCACAACCAATGGCCACACAAACCCCAGCACCACCGCAATCACAACCATCACCACCACCACCGCTGCAACCGGTATCGACTCTCCAAATACTTCTACCAAATTCCACCCCACAAAAAGAAATGCAAATGGAGATTATAAAATCAGATCATAATGGAGGGGAGATTTACAATATAAGTCCAGCAGCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCATTGATCAAATTAAGAACAAATATGGAAAACAAGTATCAAGAAAATGGACCGAAAGGGCCATTATGGGAGGAGATATCAGCAGCCATGAGGAAAATTGGTTACAACAGAAGCTCAAAGAGGTGCAAAGAGAAATGGGAAAACATCAATAAATATTTCAAGAAAGTGAAGGAAAGTAAGAAAATGAGACGTGACGATGCCAAGACTTGCCCTTACTTCAACCAGCTTGATGCTTTGTATAAGGAAAAGAGCAACAAGCTTGATAATATGATTGGTTCTTCCACACCATTACTGCAACTGCAGCACCAGCAGCAGCCATTGATGGTTCGACCCGAGCAACAATGGCCTCCACAGCAGGAGATAACTCGACCCGATTCCGGTAATGAAGAGATGGAAAGTGAACCGATGGATCGGGACGATAAAGACGGAGACGACGACGACGACGATGACGAAGAAGATGACGAAGAAGAAGACGAGGGTGGCGGGAATTATGAGATTGTGGCTAGCAAACCGGCGTCAGTGAGTGCAGCTGAGTGA | 1920 | 47.08 | MLGDSNTSSAVLGSTGGDTETAHRHDGIGIEAAGAGAEENSGEDDRGRGGGGEEGERSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLGDLGYHRSAKKCKEKFENVYKYHKRTKDVRSGKPDSKTYKFFEQLEALDTHPPSLHHLPPPPPNFPSPPSKTAAPSPLAATTMAVPPQTTVISHIPSTVPSTTSVPHLMNISFSQPNPTIHLPQPPSAAAPPPLTNPTNIVSTPFPPNVVLATPTVAATFQNIEADLISNSASSSSTSSDEDVEVSRRRRKRKWKDFFERLMREVIQKQEEMQRRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAATKDAAITSFLQKIAEGHHNNNPSQPPPPPPPSQPMATQTPAPPQSQPSPPPPLQPVSTLQILLPNSTPQKEMQMEIIKSDHNGGEIYNISPAASSSRWPKVEVQALIKLRTNMENKYQENGPKGPLWEEISAAMRKIGYNRSSKRCKEKWENINKYFKKVKESKKMRRDDAKTCPYFNQLDALYKEKSNKLDNMIGSSTPLLQLQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDGDDDDDDDEEDDEEEDEGGGNYEIVASKPASVSAAE | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 38985110 | 38987626 | + | evm.model.ptg000002l.215 | HCH12g1444 | 556291 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
HCH12g1444 | 639 | FunFam | Trihelix transcription factor GT-2 | 64 | 125 | - | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 373 | 414 | - | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 593 | 623 | - | - | |
HCH12g1444 | 639 | CDD | GT1 | 62 | 127 | - | - | |
HCH12g1444 | 639 | Gene3D | - | 455 | 516 | - | - | |
HCH12g1444 | 639 | Gene3D | - | 64 | 125 | - | - | |
HCH12g1444 | 639 | PRINTS | Proline rich extensin signature | 228 | 249 | - | - | |
HCH12g1444 | 639 | PRINTS | Proline rich extensin signature | 379 | 404 | - | - | |
HCH12g1444 | 639 | PRINTS | Proline rich extensin signature | 184 | 200 | - | - | |
HCH12g1444 | 639 | PRINTS | Proline rich extensin signature | 216 | 228 | - | - | |
HCH12g1444 | 639 | PRINTS | Proline rich extensin signature | 167 | 179 | - | - | |
HCH12g1444 | 639 | ProSiteProfiles | Myb-like domain profile. | 447 | 511 | IPR001005 | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 378 | 414 | - | - | |
HCH12g1444 | 639 | CDD | GT1 | 453 | 518 | - | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 567 | 585 | - | - | |
HCH12g1444 | 639 | Pfam | Myb/SANT-like DNA-binding domain | 62 | 148 | IPR044822 | - | |
HCH12g1444 | 639 | Pfam | Myb/SANT-like DNA-binding domain | 453 | 540 | IPR044822 | - | |
HCH12g1444 | 639 | FunFam | Trihelix transcription factor GT-2 | 455 | 516 | - | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 151 | 180 | - | - | |
HCH12g1444 | 639 | PANTHER | FI21293P1 | 40 | 606 | - | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 567 | 639 | - | - | |
HCH12g1444 | 639 | ProSiteProfiles | Myb-like domain profile. | 62 | 120 | IPR001005 | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 270 | 289 | - | - | |
HCH12g1444 | 639 | SMART | sant | 60 | 122 | IPR001005 | - | |
HCH12g1444 | 639 | SMART | sant | 451 | 513 | IPR001005 | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 39 | 53 | - | - | |
HCH12g1444 | 639 | MobiDBLite | consensus disorder prediction | 154 | 173 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1444 | HCH-Chr12:38985110 | HCH2g0216 | HCH-Chr2:27920818 | 1.50E-92 | dispersed | |
HCH12g1444 | HCH-Chr12:38985110 | HCH12g1445 | HCH-Chr12:39078637 | 8.60E-104 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32741 | PF13837 | Myb_DNA-bind_4 | 7.40E-21 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1444 | - | - | - | 0.0 |