Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1444 ATGCTGGGTGACTCAAACACTTCTTCTGCTGTCTTAGGCAGCACCGGCGGCGACACCGAAACGGCTCATCGACACGATGGAATCGGTATCGAGGCAGCGGGAGCGGGAGCGGAGGAGAATTCAGGTGAAGATGATAGAGGGAGAGGTGGTGGAGGGGAAGAAGGAGAGAGGAGTTTTGGTGGCAATAGATGGCCGAGACAAGAGACTTTAGCCCTCTTGAAAATACGCTCCGAGATGGACGTGGCTTTTAGGGATGCAAGCGTTAAAGGTCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGAGATCTTGGGTATCATCGAAGTGCAAAGAAATGCAAGGAGAAATTCGAGAATGTTTATAAGTATCACAAAAGAACCAAAGATGTTCGAAGTGGGAAACCAGACAGCAAAACTTATAAGTTTTTTGAACAATTAGAAGCTCTTGATACTCATCCTCCTTCTCTTCATCATCTTCCTCCTCCTCCACCAAATTTTCCGTCTCCTCCGTCGAAGACGGCCGCACCATCACCTCTAGCTGCTACGACAATGGCGGTTCCGCCACAAACTACCGTCATCTCCCACATTCCTTCTACTGTTCCATCGACGACATCCGTACCCCACTTGATGAATATATCATTCTCACAACCAAACCCCACAATTCACCTTCCACAACCGCCTTCTGCCGCTGCTCCACCGCCTTTGACAAACCCTACCAATATAGTTTCCACACCCTTTCCGCCGAATGTTGTTTTGGCAACTCCCACAGTGGCAGCGACGTTTCAGAATATCGAAGCGGATCTCATATCGAACTCGGCGTCGTCGTCTTCGACATCGTCGGACGAGGATGTTGAAGTTTCGAGGCGGAGGAGGAAGAGGAAATGGAAGGACTTTTTCGAGAGATTGATGAGAGAGGTGATCCAGAAGCAAGAGGAAATGCAAAGGAGATTCTTGGAAGCTATTGAGAAAAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAAATGGCTAAAATCAATAGGGAGAGAGAGATTTTAGCTCAAGAGAGATCAATGGCTGCTACCAAAGATGCCGCCATAACATCCTTCTTGCAAAAAATAGCCGAAGGACACCACAACAATAACCCATCACAACCGCCACCGCCACCGCCACCGTCACAACCAATGGCCACACAAACCCCAGCACCACCGCAATCACAACCATCACCACCACCACCGCTGCAACCGGTATCGACTCTCCAAATACTTCTACCAAATTCCACCCCACAAAAAGAAATGCAAATGGAGATTATAAAATCAGATCATAATGGAGGGGAGATTTACAATATAAGTCCAGCAGCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCATTGATCAAATTAAGAACAAATATGGAAAACAAGTATCAAGAAAATGGACCGAAAGGGCCATTATGGGAGGAGATATCAGCAGCCATGAGGAAAATTGGTTACAACAGAAGCTCAAAGAGGTGCAAAGAGAAATGGGAAAACATCAATAAATATTTCAAGAAAGTGAAGGAAAGTAAGAAAATGAGACGTGACGATGCCAAGACTTGCCCTTACTTCAACCAGCTTGATGCTTTGTATAAGGAAAAGAGCAACAAGCTTGATAATATGATTGGTTCTTCCACACCATTACTGCAACTGCAGCACCAGCAGCAGCCATTGATGGTTCGACCCGAGCAACAATGGCCTCCACAGCAGGAGATAACTCGACCCGATTCCGGTAATGAAGAGATGGAAAGTGAACCGATGGATCGGGACGATAAAGACGGAGACGACGACGACGACGATGACGAAGAAGATGACGAAGAAGAAGACGAGGGTGGCGGGAATTATGAGATTGTGGCTAGCAAACCGGCGTCAGTGAGTGCAGCTGAGTGA 1920 47.08 MLGDSNTSSAVLGSTGGDTETAHRHDGIGIEAAGAGAEENSGEDDRGRGGGGEEGERSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLGDLGYHRSAKKCKEKFENVYKYHKRTKDVRSGKPDSKTYKFFEQLEALDTHPPSLHHLPPPPPNFPSPPSKTAAPSPLAATTMAVPPQTTVISHIPSTVPSTTSVPHLMNISFSQPNPTIHLPQPPSAAAPPPLTNPTNIVSTPFPPNVVLATPTVAATFQNIEADLISNSASSSSTSSDEDVEVSRRRRKRKWKDFFERLMREVIQKQEEMQRRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAATKDAAITSFLQKIAEGHHNNNPSQPPPPPPPSQPMATQTPAPPQSQPSPPPPLQPVSTLQILLPNSTPQKEMQMEIIKSDHNGGEIYNISPAASSSRWPKVEVQALIKLRTNMENKYQENGPKGPLWEEISAAMRKIGYNRSSKRCKEKWENINKYFKKVKESKKMRRDDAKTCPYFNQLDALYKEKSNKLDNMIGSSTPLLQLQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDGDDDDDDDEEDDEEEDEGGGNYEIVASKPASVSAAE 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38985110 38987626 + evm.model.ptg000002l.215 HCH12g1444 556291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1444 639 MobiDBLite consensus disorder prediction 1 16 - -
HCH12g1444 639 FunFam Trihelix transcription factor GT-2 64 125 - -
HCH12g1444 639 MobiDBLite consensus disorder prediction 373 414 - -
HCH12g1444 639 MobiDBLite consensus disorder prediction 593 623 - -
HCH12g1444 639 CDD GT1 62 127 - -
HCH12g1444 639 Gene3D - 455 516 - -
HCH12g1444 639 Gene3D - 64 125 - -
HCH12g1444 639 PRINTS Proline rich extensin signature 228 249 - -
HCH12g1444 639 PRINTS Proline rich extensin signature 379 404 - -
HCH12g1444 639 PRINTS Proline rich extensin signature 184 200 - -
HCH12g1444 639 PRINTS Proline rich extensin signature 216 228 - -
HCH12g1444 639 PRINTS Proline rich extensin signature 167 179 - -
HCH12g1444 639 ProSiteProfiles Myb-like domain profile. 447 511 IPR001005 -
HCH12g1444 639 MobiDBLite consensus disorder prediction 378 414 - -
HCH12g1444 639 CDD GT1 453 518 - -
HCH12g1444 639 MobiDBLite consensus disorder prediction 1 64 - -
HCH12g1444 639 MobiDBLite consensus disorder prediction 567 585 - -
HCH12g1444 639 Pfam Myb/SANT-like DNA-binding domain 62 148 IPR044822 -
HCH12g1444 639 Pfam Myb/SANT-like DNA-binding domain 453 540 IPR044822 -
HCH12g1444 639 FunFam Trihelix transcription factor GT-2 455 516 - -
HCH12g1444 639 MobiDBLite consensus disorder prediction 151 180 - -
HCH12g1444 639 PANTHER FI21293P1 40 606 - -
HCH12g1444 639 MobiDBLite consensus disorder prediction 567 639 - -
HCH12g1444 639 ProSiteProfiles Myb-like domain profile. 62 120 IPR001005 -
HCH12g1444 639 MobiDBLite consensus disorder prediction 270 289 - -
HCH12g1444 639 SMART sant 60 122 IPR001005 -
HCH12g1444 639 SMART sant 451 513 IPR001005 -
HCH12g1444 639 MobiDBLite consensus disorder prediction 39 53 - -
HCH12g1444 639 MobiDBLite consensus disorder prediction 154 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1444 HCH-Chr12:38985110 HCH2g0216 HCH-Chr2:27920818 1.50E-92 dispersed
HCH12g1444 HCH-Chr12:38985110 HCH12g1445 HCH-Chr12:39078637 8.60E-104 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32741 PF13837 Myb_DNA-bind_4 7.40E-21 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1444 - - - 0.0