Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1445 ATGGATGGTGACTCCGGTGAGGCGGCGGCGGCGGCGGTGGCTGTCGAAGCTCATCAAGGTGAGGAATATGGCGGCGATAGCGGTGGCGGTGGCGGTTCCGGGTCCAATTCAGTTGAAGAAGATAAGGGCTTCAAAGATATAATTATTAACGAAGATGGTGACAAGAATTTTGGTGGAAACCGGTGGCCTCGCCATGAAACTTTGGCCTTATTGAAGATAAGATCAGATATGGATGCAGTTTTTAGAGACTCAACTCATAAAGCTCCATTATGGGATGAAGTTTCAAGGAAGCTAGGAGAGCTTGGTTACAATAGAAATGCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTATAAGTATCATAAAAGAACCAAAGAAGTTCGAAATGGGAAATCTGATAATAGTAAAAAATTGTATAAGTTTTCTGATGAATTAGAAGCTCTTGATAATCATCAGATTTCATTTCAATCATCAGTTCCTCAATCTTTCAATCCTCCATGGAATGTTTCTGGGAAAAATGCTGTTTCTACTGTTCCATCGCCTATAAACCCTACTAAAACTTCTTCACAAAATAATAGCCTTAAGTTCCCTTCTAAATCTTTACCACCTAAATCCAATAGCCCACTTTCCAATGTGCCAAACATGTCTGTAAATGTTGTCTTTTCGAGCTCGACTTCGTCGTCGACAGCGTCGGATGAAGATCCAGTCCGGAGGCAGCAGCGGAAGCGGAAGAGAAAGTGGACGGATTTCTTCGTGAGGCTGACAAAGGAGGTGATAGAGAAGCAAGAGGGTTTGCAACTCAAGTTCTTGGAAGCCTTGGAGAGAATAGAAAACCAAAGGAAGTTGAGAGATGAAGCTTGGAGAATGAAAGAGGCTTCAAGGGTTAATAGAGAGCATGAGATTTTGATCCAAGAGATGTCTATGGCAGCAGAAAAAGATGCAGCTGTGGTTGCATTTTTGCAGAAATTAACCGCTTCTCCGATTCGACCACTGCCACCGCTATCACTTCCTCCTCCTCCACCGCAACTGCAACCGCAACCACAACCGCAACTGATCACCCCGACGGTGAATTTGGATAATATTGTAAAAATTCAAAATGGTGAGAATAATGGAGTTATTACAACTCTTGCAAGCTCTTCAAGATGGCCAAAGAGTGAAGTGGAAGAATTGATAAGGCTTAGAACAGAACTGGAAATGAAGTATCAAGACAATGGGGGTAAAGGGCCATTGTGGGAAGAGATTTCAGCAGCCATGGGAAAGCTTGGATATAGCAGAAGTGCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAAAGTGAAAGATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACCTGTCCCTACTTCCATCAATTGGATGCTCTATACAAAGAGAAATTTGGAAAGAACATGATGAGTTTTGATATCAATAGCCAAATGGAGCCATTAATGGTGGAACCAGAACAACAATGGCCTCCTCCATTACAAGGGAATCATATAATAATAGGAAACATTCAAAGAATAAACAGTGAAGAAAATGAAGAAGATGATGAAGAAGAAGATGGATCAAATAGCAGTACTGATATAGAAGATCATGTAGAAGAAGAAGAAGAAGATGGTGGAAGCAGCTTTGATCAGATACAGTCTACAATAAGCATAAGCAACACAGTTTGA 1689 41.15 MDGDSGEAAAAAVAVEAHQGEEYGGDSGGGGGSGSNSVEEDKGFKDIIINEDGDKNFGGNRWPRHETLALLKIRSDMDAVFRDSTHKAPLWDEVSRKLGELGYNRNAKKCKEKFENVYKYHKRTKEVRNGKSDNSKKLYKFSDELEALDNHQISFQSSVPQSFNPPWNVSGKNAVSTVPSPINPTKTSSQNNSLKFPSKSLPPKSNSPLSNVPNMSVNVVFSSSTSSSTASDEDPVRRQQRKRKRKWTDFFVRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRMKEASRVNREHEILIQEMSMAAEKDAAVVAFLQKLTASPIRPLPPLSLPPPPPQLQPQPQPQLITPTVNLDNIVKIQNGENNGVITTLASSSRWPKSEVEELIRLRTELEMKYQDNGGKGPLWEEISAAMGKLGYSRSAKRCKEKWENINKYFKKVKDSNKKRPEDSKTCPYFHQLDALYKEKFGKNMMSFDINSQMEPLMVEPEQQWPPPLQGNHIIIGNIQRINSEENEEDDEEEDGSNSSTDIEDHVEEEEEDGGSSFDQIQSTISISNTV 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39078637 39080901 - evm.model.ptg000002l.214 HCH12g1445 556292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1445 562 CDD GT1 380 445 - -
HCH12g1445 562 Gene3D - 382 443 - -
HCH12g1445 562 Gene3D - 62 123 - -
HCH12g1445 562 MobiDBLite consensus disorder prediction 515 562 - -
HCH12g1445 562 MobiDBLite consensus disorder prediction 1 45 - -
HCH12g1445 562 ProSiteProfiles Myb-like domain profile. 380 438 IPR001005 -
HCH12g1445 562 FunFam Trihelix transcription factor GT-2 62 123 - -
HCH12g1445 562 Pfam Myb/SANT-like DNA-binding domain 60 140 IPR044822 -
HCH12g1445 562 Pfam Myb/SANT-like DNA-binding domain 380 467 IPR044822 -
HCH12g1445 562 MobiDBLite consensus disorder prediction 223 242 - -
HCH12g1445 562 MobiDBLite consensus disorder prediction 516 547 - -
HCH12g1445 562 SMART sant 58 120 IPR001005 -
HCH12g1445 562 SMART sant 378 440 IPR001005 -
HCH12g1445 562 CDD GT1 60 125 - -
HCH12g1445 562 MobiDBLite consensus disorder prediction 170 213 - -
HCH12g1445 562 PANTHER FI21293P1 32 520 - -
HCH12g1445 562 FunFam Trihelix transcription factor GT-2 382 443 - -
HCH12g1445 562 ProSiteProfiles Myb-like domain profile. 54 118 IPR001005 -
HCH12g1445 562 MobiDBLite consensus disorder prediction 548 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1445 HCH-Chr12:39078637 HCH2g0216 HCH-Chr2:27920818 2.10E-90 dispersed
HCH12g1444 HCH-Chr12:38985110 HCH12g1445 HCH-Chr12:39078637 8.60E-104 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32742 PF13837 Myb_DNA-bind_4 3.70E-22 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1445 - - - 0.0