Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1446 ATGTCATTCCGCAGTATAGTGCGTGATGTTCGAGATGGGTTTGGAAGTTTATCCAGGCGTAGTTTTGAGGTGAGACTGCCTGGACATCAAAGGGGTAAATCTCATGGATCAGTCCATGATTTGCATGACCAACCGCTGGTAACCCAGACCAGCCGTTGGGCTAGCCTCCCACCTGAGCTATTGCGGGATGTTATCGTGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGGTCGCAGGCATGTTGTTTCATGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAAATAGTAAGAAATCCTGAGTTATCTGGGAAAATTACCTTTCCTGTCTCCTTGAAGCAGCCTGGGACTCGTGATGGAACCATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCACCTTTTCCTTTCCCTTACTCCCGCTTTGCTTGTTGAGAATGGTAAATTTCTTCTTTCTGCAAAACGAACAAGGAGAACTACTTGCACCGAGTATGTGATCTCCATGGATGTGGATAACATATCAAGATCAAGCAGCACCTACATCGGAAAACTAAGGTCCAATTTTCTCGGGACCAAGTTCATTATCTATGATACACAGCCTCCATACAACGGTGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTTTACTCAAAAAAGGTTTCTCCAAAGGTCCCAACTGGTAGCTATGATATTGCACAGATCACCTATGAGTTGAATGTTTTAGGCACAAGAGGTCCACGAAAGATGCACTGCACCATGCATTCCATCCCTGCCTCGGCCCTTGAGCCTGGTGGCATGGTTCCAGGCCAGCCTGAGGTCCTTCCTCGACTCCTTGAGGACTCATTCCGAAGTATATCATTCTCAAAGTCGGTTTTTAATTCCACTGAGTTTAGTAGTTCCCGCTTCTCTGACATTGTTGGCTCACGGGATGAAGATGAAGAGGGGAAGGAGATACCATTAGTTCTTCGGAATAAGCCACCTCGTTGGCACGAGCAGTTGCAATGTTGGTGTCTTAATTTTCGGGGCCGGGTAACTGTTGCCTCTGTCAAAAACTTTCAGCTGATAGCTGCACCACAGCCTTCTTCTTCTGGAGCTACAAATCAATCACAGCCAGCCCAACCTGCCCAATCTTCCCAATCTGACCATGACAAGATTATTCTTCAATTCGGGAAGGTTGGAAAGGACATGTTTACCATGGATTACCGATATCCACTATCAGCATTTCAAGCTTTTGCCATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.37 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVTQTSRWASLPPELLRDVIVRLEESESVWPGRRHVVSCAAVCRSWREMCKEIVRNPELSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLFLSLTPALLVENGKFLLSAKRTRRTTCTEYVISMDVDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNGAQISPPGRSRRFYSKKVSPKVPTGSYDIAQITYELNVLGTRGPRKMHCTMHSIPASALEPGGMVPGQPEVLPRLLEDSFRSISFSKSVFNSTEFSSSRFSDIVGSRDEDEEGKEIPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAPQPSSSGATNQSQPAQPAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39198182 39201244 + evm.model.ptg000002l.213 HCH12g1446 556293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1446 431 PANTHER TUBBY-RELATED 47 430 - -
HCH12g1446 431 Pfam Tub family 114 426 IPR000007 -
HCH12g1446 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
HCH12g1446 431 FunFam Tubby-like F-box protein 48 101 - -
HCH12g1446 431 FunFam Tubby-like F-box protein 110 431 - -
HCH12g1446 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
HCH12g1446 431 MobiDBLite consensus disorder prediction 366 387 - -
HCH12g1446 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
HCH12g1446 431 Gene3D - 48 104 - -
HCH12g1446 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
HCH12g1446 431 CDD F-box_AtTLP-like 53 97 - -
HCH12g1446 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
HCH12g1446 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
HCH12g1446 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
HCH12g1446 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
HCH12g1446 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
HCH12g1446 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
HCH12g1446 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
HCH12g1446 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
HCH12g1446 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1446 HCH-Chr12:39198182 HCH6g1661 HCH-Chr6:49522540 4.70E-122 dispersed
HCH11g0876 HCH-Chr11:39677143 HCH12g1446 HCH-Chr12:39198182 2.70E-194 transposed
HCH12g1446 HCH-Chr12:39198182 HCH13g0234 HCH-Chr13:1539533 3.60E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32743 PF01167 Tub 1.20E-117 CL0395 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1446 K19600 - csv:101206041 803.127