Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1467 ATGGATCCTGAAGAGAGTTCTTGTGCCTCTGAAGTTTGGAAAAAATCTTCATCTTTTTCTAATATGATTAACCAGGAATCTGCACAGAAATGGGAAGATGCTTCCATTTTAGATTTTGGTATGGAACAACCTTTTCGAGAATTCGAACAACTGCCTGAATCCAAGGCTTCTCTAACCTGTAACCCGAATCAACCAGTTGAAATCCATGGAAAAGATGGTGGTCAGATAAATGCAGCAGCTCTAGCTAGCAAAATCCAAGATTGGGATCCAAGAGCAATGCTAAATAATCTTTCCTTCCTCGAGCAGAAGATTCACCAGCTCCAGGAACTTGTGCATTTGATTGTTGGTAGGAGAAGTCAAGTTTTGGGGCGACCAGATGAACTTGTTGTTCAGCAACAACAGCTGATAACCGCAGATCTAACCTCAATTATCGTTCAGCTAATCTCGGCAGCTGGTAGCCTTCTTCCGTCTGTGAAACATAACATGCCTGCAGCTGTTTCCCCTATTGGCCAGCTGGAGCAGCTTGACAGGGTTCTTTTTACATCCGAAGCAGGGAGTAGTGTTGTTATTCACTCACAATGTGATGGTGGAACCAAAGTTCCCGAGCTTCCAACCCAAGTTGACCAAACTAGCAAGTATGGGAATGAACAGAACATTACTTTTGAAGAACATGAATCAAAGGATGAAGAAGATGCTGATGAAAGTGAGAACCTTCCACCCGGTTCTTATGAAATATTACAGCTAGAGAAGGAAGAGATCCTTGCACCTCATACACACTTCTGTGCAATATGCGGCAAAGGGTTCAAGAGAGATGCAAATTTACGTATGCACATGAGAGGTCATGGTGACGAGTATAAAAGTGCAGCCGCTCTTGCAAAGCCGAACAGAGAATCGAGTTCGGAAACTTTGCTTATCAAGAGGTATTCCTGCCCCTACACTGGCTGCAAGCGGAATAAAGAACACAAGAAGTTCCAGCCTTTGAAGACTATTTTATGTGTCAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTACACTTGCAGTAAATGCAACTCCAAGAAATTCTCTGTAATTGCTGATCTCAAAACGCATGAGAAGCATTGTGGAAAAGATAAGTGGCTCTGTTCTTGTGGGACTACATTCTCTAGAAAAGACAAGCTTTTCGGGCACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCCCTTGATGAATCAAAGGGACTGGCAGTGACATGTGATAGAGGAGAAGGCTATGAAGCAACAAATAAGATTGCGAGTACGAATTTCACTTTTGGATCCATTGCTCCTAGTGGAAGTTCAGTCGAAAACATCGTTGATACGAAAGGCGGTGTCAACGATCCTCTAAGTTATTTCTCTCCTATGAACTTTGATACATGTAATTTTAGTGGATTTCACGAGTTTCCTCGACCGCCATTCGAAAATACAGAGAGTGCGTTTTCATTCCTTATCCCGCCATGTAGCAATTACACCCAAAAACCTGGAGCAGAATCAAGCTTTAACAATCTTGAATGA 1539 42.56 MDPEESSCASEVWKKSSSFSNMINQESAQKWEDASILDFGMEQPFREFEQLPESKASLTCNPNQPVEIHGKDGGQINAAALASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVLGRPDELVVQQQQLITADLTSIIVQLISAAGSLLPSVKHNMPAAVSPIGQLEQLDRVLFTSEAGSSVVIHSQCDGGTKVPELPTQVDQTSKYGNEQNITFEEHESKDEEDADESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKSAAALAKPNRESSSETLLIKRYSCPYTGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSYTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGLAVTCDRGEGYEATNKIASTNFTFGSIAPSGSSVENIVDTKGGVNDPLSYFSPMNFDTCNFSGFHEFPRPPFENTESAFSFLIPPCSNYTQKPGAESSFNNLE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40036919 40038457 + evm.model.ptg000002l.192 HCH12g1467 556314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1467 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 59 491 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
HCH12g1467 512 SUPERFAMILY beta-beta-alpha zinc fingers 257 284 IPR036236 -
HCH12g1467 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
HCH12g1467 512 MobiDBLite consensus disorder prediction 211 240 - -
HCH12g1467 512 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
HCH12g1467 512 Gene3D Classic Zinc Finger 243 314 - -
HCH12g1467 512 SMART c2h2final6 308 341 IPR013087 -
HCH12g1467 512 SMART c2h2final6 346 368 IPR013087 -
HCH12g1467 512 SMART c2h2final6 259 281 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1467 HCH-Chr12:40036919 HCH14g0481 HCH-Chr14:33837425 4.80E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32746 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1467 - - - 0.0