Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1470 ATGGCCATGGCTGCCTCTTCTTCTTCTTCCTCTAAGCCTTTCATTCTCTCTTCTGATTCCCCCACGAGAGTTTCTCTCACACCCGATCAGATTAAGTTTTGTTCTGAGGCTCTTGATGTCTTTAAGGAGAAGCTTCAGATGCCTCTTCTCATCTCCCAGGAGTTTGCCAGATTGCAGGCCAATAGGATAACTTCATCTGATATGAATAGAAGTTGCTCTGTTGCTCGTGACAGCGTCAACGTTACCAAAAACCGCTACATGGATGTATTGCCATTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCGAGAGGTTACATAAATGCAAGCTTCATCTCTACTTCCTCCTCAAAAAGCATTTCTAAATTTATAGCCACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAGTGCCCTGCAATTGTGATGCTTACTCGGTTAGTCGATAATTACAAGATGGTAAAATGTGGGGATTATTTTCAGGCTGAAGATGGACCAAGAGATTTTGGTAATATATGTATTGCCTCTAAATGGATTAAAGATTCTGATACCTCTCTTTTATTGCGCTGTTTGGAGGTGAACCATAAAGAGTTGGGAGAAGAGCCTATGTCTGTTTTGCATATTCAGTATGCAGAATGGCCTGACCATGGAGTTCCTAATGACACATTTGCTGTTCGTGAAATTTTGAAGAGACTATTACATGTACCTCCCGATCTTGGTCCAATCGTGGTGCACTGCAGTGCAGGCATTGGGAGAACTGGAACGTACTGCGCAATTCATAACACAATTCAGAGAATCCTGGCTGGCGACATGTCTGCTTTAGATCTTGTCAGTACCATTTCCATATTTAGGTCTCAGCGAAATGGAATGGTTCAAACACAGGAGCAATATTTATTCTGCTATAGAACTATCGTTGATGAACTAGAAGACCTCATATCAGTTCCACAATAG 993 41.69 MAMAASSSSSSKPFILSSDSPTRVSLTPDQIKFCSEALDVFKEKLQMPLLISQEFARLQANRITSSDMNRSCSVARDSVNVTKNRYMDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSISKFIATQGPLPHTYEDFWEMVFQYKCPAIVMLTRLVDNYKMVKCGDYFQAEDGPRDFGNICIASKWIKDSDTSLLLRCLEVNHKELGEEPMSVLHIQYAEWPDHGVPNDTFAVREILKRLLHVPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLVSTISIFRSQRNGMVQTQEQYLFCYRTIVDELEDLISVPQ 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40084931 40090429 - evm.model.ptg000002l.189 HCH12g1470 556317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1470 330 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 14 322 IPR050348 GO:0004725(PANTHER)
HCH12g1470 330 MobiDBLite consensus disorder prediction 1 23 - -
HCH12g1470 330 FunFam Tyrosine-protein phosphatase non-receptor type 12 28 328 - -
HCH12g1470 330 CDD PTPc_plant_PTP1 112 315 - -
HCH12g1470 330 Gene3D Protein tyrosine phosphatase superfamily 27 323 IPR029021 -
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 288 303 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 304 314 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 129 149 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 111 118 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 217 234 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 255 273 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 40 323 IPR029021 -
HCH12g1470 330 SMART PTPc_3 50 323 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 ProSitePatterns Tyrosine specific protein phosphatases active site. 258 268 IPR016130 GO:0016311(InterPro)
HCH12g1470 330 Pfam Protein-tyrosine phosphatase 80 319 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 ProSiteProfiles PTP type protein phosphatase domain profile. 51 321 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 SMART ptp_7 218 320 IPR003595 -
HCH12g1470 330 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 312 IPR000387 GO:0016311(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1470 - - - 0.0