Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1470 ATGGCCATGGCTGCCTCTTCTTCTTCTTCCTCTAAGCCTTTCATTCTCTCTTCTGATTCCCCCACGAGAGTTTCTCTCACACCCGATCAGATTAAGTTTTGTTCTGAGGCTCTTGATGTCTTTAAGGAGAAGCTTCAGATGCCTCTTCTCATCTCCCAGGAGTTTGCCAGATTGCAGGCCAATAGGATAACTTCATCTGATATGAATAGAAGTTGCTCTGTTGCTCGTGACAGCGTCAACGTTACCAAAAACCGCTACATGGATGTATTGCCATTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCGAGAGGTTACATAAATGCAAGCTTCATCTCTACTTCCTCCTCAAAAAGCATTTCTAAATTTATAGCCACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAGTGCCCTGCAATTGTGATGCTTACTCGGTTAGTCGATAATTACAAGATGGTAAAATGTGGGGATTATTTTCAGGCTGAAGATGGACCAAGAGATTTTGGTAATATATGTATTGCCTCTAAATGGATTAAAGATTCTGATACCTCTCTTTTATTGCGCTGTTTGGAGGTGAACCATAAAGAGTTGGGAGAAGAGCCTATGTCTGTTTTGCATATTCAGTATGCAGAATGGCCTGACCATGGAGTTCCTAATGACACATTTGCTGTTCGTGAAATTTTGAAGAGACTATTACATGTACCTCCCGATCTTGGTCCAATCGTGGTGCACTGCAGTGCAGGCATTGGGAGAACTGGAACGTACTGCGCAATTCATAACACAATTCAGAGAATCCTGGCTGGCGACATGTCTGCTTTAGATCTTGTCAGTACCATTTCCATATTTAGGTCTCAGCGAAATGGAATGGTTCAAACACAGGAGCAATATTTATTCTGCTATAGAACTATCGTTGATGAACTAGAAGACCTCATATCAGTTCCACAATAG 993 41.69 MAMAASSSSSSKPFILSSDSPTRVSLTPDQIKFCSEALDVFKEKLQMPLLISQEFARLQANRITSSDMNRSCSVARDSVNVTKNRYMDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSISKFIATQGPLPHTYEDFWEMVFQYKCPAIVMLTRLVDNYKMVKCGDYFQAEDGPRDFGNICIASKWIKDSDTSLLLRCLEVNHKELGEEPMSVLHIQYAEWPDHGVPNDTFAVREILKRLLHVPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLVSTISIFRSQRNGMVQTQEQYLFCYRTIVDELEDLISVPQ 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40084931 40090429 - evm.model.ptg000002l.189 HCH12g1470 556317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1470 330 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 14 322 IPR050348 GO:0004725(PANTHER)
HCH12g1470 330 MobiDBLite consensus disorder prediction 1 23 - -
HCH12g1470 330 FunFam Tyrosine-protein phosphatase non-receptor type 12 28 328 - -
HCH12g1470 330 CDD PTPc_plant_PTP1 112 315 - -
HCH12g1470 330 Gene3D Protein tyrosine phosphatase superfamily 27 323 IPR029021 -
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 288 303 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 304 314 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 129 149 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 111 118 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 217 234 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 PRINTS Protein tyrosine phosphatase signature 255 273 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 40 323 IPR029021 -
HCH12g1470 330 SMART PTPc_3 50 323 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 ProSitePatterns Tyrosine specific protein phosphatases active site. 258 268 IPR016130 GO:0016311(InterPro)
HCH12g1470 330 Pfam Protein-tyrosine phosphatase 80 319 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 ProSiteProfiles PTP type protein phosphatase domain profile. 51 321 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
HCH12g1470 330 SMART ptp_7 218 320 IPR003595 -
HCH12g1470 330 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 312 IPR000387 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1470 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008867 1 2 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33