Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1470 | ATGGCCATGGCTGCCTCTTCTTCTTCTTCCTCTAAGCCTTTCATTCTCTCTTCTGATTCCCCCACGAGAGTTTCTCTCACACCCGATCAGATTAAGTTTTGTTCTGAGGCTCTTGATGTCTTTAAGGAGAAGCTTCAGATGCCTCTTCTCATCTCCCAGGAGTTTGCCAGATTGCAGGCCAATAGGATAACTTCATCTGATATGAATAGAAGTTGCTCTGTTGCTCGTGACAGCGTCAACGTTACCAAAAACCGCTACATGGATGTATTGCCATTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCGAGAGGTTACATAAATGCAAGCTTCATCTCTACTTCCTCCTCAAAAAGCATTTCTAAATTTATAGCCACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAGTATAAGTGCCCTGCAATTGTGATGCTTACTCGGTTAGTCGATAATTACAAGATGGTAAAATGTGGGGATTATTTTCAGGCTGAAGATGGACCAAGAGATTTTGGTAATATATGTATTGCCTCTAAATGGATTAAAGATTCTGATACCTCTCTTTTATTGCGCTGTTTGGAGGTGAACCATAAAGAGTTGGGAGAAGAGCCTATGTCTGTTTTGCATATTCAGTATGCAGAATGGCCTGACCATGGAGTTCCTAATGACACATTTGCTGTTCGTGAAATTTTGAAGAGACTATTACATGTACCTCCCGATCTTGGTCCAATCGTGGTGCACTGCAGTGCAGGCATTGGGAGAACTGGAACGTACTGCGCAATTCATAACACAATTCAGAGAATCCTGGCTGGCGACATGTCTGCTTTAGATCTTGTCAGTACCATTTCCATATTTAGGTCTCAGCGAAATGGAATGGTTCAAACACAGGAGCAATATTTATTCTGCTATAGAACTATCGTTGATGAACTAGAAGACCTCATATCAGTTCCACAATAG | 993 | 41.69 | MAMAASSSSSSKPFILSSDSPTRVSLTPDQIKFCSEALDVFKEKLQMPLLISQEFARLQANRITSSDMNRSCSVARDSVNVTKNRYMDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSISKFIATQGPLPHTYEDFWEMVFQYKCPAIVMLTRLVDNYKMVKCGDYFQAEDGPRDFGNICIASKWIKDSDTSLLLRCLEVNHKELGEEPMSVLHIQYAEWPDHGVPNDTFAVREILKRLLHVPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLVSTISIFRSQRNGMVQTQEQYLFCYRTIVDELEDLISVPQ | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 40084931 | 40090429 | - | evm.model.ptg000002l.189 | HCH12g1470 | 556317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1470 | 330 | PANTHER | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE | 14 | 322 | IPR050348 | GO:0004725(PANTHER) | |
HCH12g1470 | 330 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
HCH12g1470 | 330 | FunFam | Tyrosine-protein phosphatase non-receptor type 12 | 28 | 328 | - | - | |
HCH12g1470 | 330 | CDD | PTPc_plant_PTP1 | 112 | 315 | - | - | |
HCH12g1470 | 330 | Gene3D | Protein tyrosine phosphatase superfamily | 27 | 323 | IPR029021 | - | |
HCH12g1470 | 330 | PRINTS | Protein tyrosine phosphatase signature | 288 | 303 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | PRINTS | Protein tyrosine phosphatase signature | 304 | 314 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | PRINTS | Protein tyrosine phosphatase signature | 129 | 149 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | PRINTS | Protein tyrosine phosphatase signature | 111 | 118 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | PRINTS | Protein tyrosine phosphatase signature | 217 | 234 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | PRINTS | Protein tyrosine phosphatase signature | 255 | 273 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 40 | 323 | IPR029021 | - | |
HCH12g1470 | 330 | SMART | PTPc_3 | 50 | 323 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 258 | 268 | IPR016130 | GO:0016311(InterPro) | |
HCH12g1470 | 330 | Pfam | Protein-tyrosine phosphatase | 80 | 319 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | ProSiteProfiles | PTP type protein phosphatase domain profile. | 51 | 321 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
HCH12g1470 | 330 | SMART | ptp_7 | 218 | 320 | IPR003595 | - | |
HCH12g1470 | 330 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 240 | 312 | IPR000387 | GO:0016311(InterPro) |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1470 | - | - | - | 0.0 |