Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1480 ATGGCTTCCCTTCAACAAACCCTAATTTCCCTCCAATCCAAGCTCCCACCAGCATCCGTACGAATCTCACAAATCTCTCCCATAAACCTCTCTTTCTCCGCCACTTTCCCCTCTCTCAAACTCTCTTCTTCAACTCTTAGCCACCGCTCAGCCTCCTCCTCCGCAGCCGGAGCAAGAATGTCCGCCACCGCAGCCGGAAGCTACGCGAACGCACTCGCCGAAGTCGCGGCATCAAACAGCACACTGGACGCAACGAGCACCGACGTGGAGAAGATCGAGAAAGTGTTCTCCGATCCACAAGTGTTCGATTTCTTCGCGAATCCAACGATCGACATAGAGAAGAAATTGACAGTCGTAGAGGAGATCGGTTCGTCTTTGGGATTACAGCCTCACTCGGTGAATTTCATTAAAATATTAGTGGACGCAAAGAGAATCGATATAATAAAAGATATATTGAAGGAATTCGAATTGGTGTATAATGGCTTGACGCACACGGAATTGGCGGTGGTGAGCTCCGTGGTGCCATTGGAGCAGCAGCATTTAGCGCAGATAGCGAAGCAAGTGCAGAAATTGAGTGGGGCGAAGAATGTGAGGATCAAGACGCAGATTGATGCGAGTTTGGTAGCGGGATTTACTGTGAGATATGGAAATAGTGGTTCCAAATTGATTGATTTGAGTGTCAAGAAACAGCTTGAAGAAATTGCTTCTCAGCTTGAAATTGGGGATATTAAATTAACTGTATAA 744 47.04 MASLQQTLISLQSKLPPASVRISQISPINLSFSATFPSLKLSSSTLSHRSASSSAAGARMSATAAGSYANALAEVAASNSTLDATSTDVEKIEKVFSDPQVFDFFANPTIDIEKKLTVVEEIGSSLGLQPHSVNFIKILVDAKRIDIIKDILKEFELVYNGLTHTELAVVSSVVPLEQQHLAQIAKQVQKLSGAKNVRIKTQIDASLVAGFTVRYGNSGSKLIDLSVKKQLEEIASQLEIGDIKLTV 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40398017 40398760 + evm.model.ptg000002l.179 HCH12g1480 556327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1480 247 PRINTS ATP synthase delta subunit signature 144 158 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 PRINTS ATP synthase delta subunit signature 133 144 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 PRINTS ATP synthase delta subunit signature 195 210 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 PRINTS ATP synthase delta subunit signature 213 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 PRINTS ATP synthase delta subunit signature 64 83 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 NCBIfam ATP synthase F1 subunit delta 65 238 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 Hamap ATP synthase subunit delta [atpD]. 60 240 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 Pfam ATP synthase delta (OSCP) subunit 65 238 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 197 216 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
HCH12g1480 247 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 61 162 IPR026015 -
HCH12g1480 247 Gene3D - 64 156 IPR026015 -
HCH12g1480 247 PANTHER ATP SYNTHASE DELTA CHAIN 40 239 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1480 HCH-Chr12:40398017 HCH7g1730 HCH-Chr7:49051172 3.00E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1480 K02113 - csv:101211740 331.257