Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1482 | ATGGAGCTTAACAAGGTTTGGGCTCTTGGTTTGGTCTGGTTGATCTTGGTCGTTAAACCACTATGGCTGGTTTTTGCTAACATGGAAGGTGATGCTTTGCATAGCTTAAGAACTAGCTTGCAGGACCCTAACAATGTCTTGCAGAGTTGGGATCCCACACTTGTCAATCCCTGTACATGGTTTCATGTTACTTGCAATAATGATAATAGTGTAATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGTACACTTGTCCCACAGCTTGGCCTCCTAAAAAATTTGCAGTATTTAGAACTCTACAGCAATCACATAAGTGGGGTTATCCCTAGTGATCTTGGGAATCTGACTAGTCTGGTGAGCTTAGATCTTTATTTGAACAATTTTACAGGTTCGATTCCAGACACATTGGGCAAGCTGTCAAAATTACGGTTCCTTCGGCTTAACAACAACAGCTTAGCAGGTCCAATTCCTATGTCATTGACTAATATTTCCTCTCTTCAAGTGCTGGATCTATCAAATAACCATCTTTCAGGCGTGGTTCCAGATAATGGTTCCTTCTCCTTATTTACCCCCATCAGTTTTACTAACAACTTGGATCTTTGTGGCCCCGTTACTGGGCACCCCTGCCCTGGCTCTCCACCATTTTCTCCTCCTCCTCCTTTTGTTCCACCAACACCAGTATCTTCACCAGGTGGAAATAGTGTCACCGGGGCAATTGCTGGTGGAGTAGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAAATTTTCTTTGATGTACCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTTAGAGAATTACAAGTGGCATCAGATAGTTTTAGTAACAAAAACATACTCGGCAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGATGGTTCTTTAGTAGCCGTAAAAAGACTGAAGGAAGAGCGTACTCCAGGTGGAGAGCTGCAATTTCAAACAGAAGTGGAGATGATCAGTATGGCTGTGCATCGAAATCTCCTACGGTTACGTGGATTTTGTATGACACCGACTGAACGACTGCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCATCTTGTTTAAGAGAACGGCCACCATCCCAACCACCTCTTGATTGGAAAACGAGGAAGCGAATTGCATTGGGATCTGCAAGAGGACTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGTGATGTAAAAGCAGCAAATATTTTACTGGATGAGGAGTTTGAGGCTGTCGTCGGAGATTTTGGGTTGGCGAAGCTTATGGACTACAAGGATACTCATGTCACCACCGCCGTACGTGGTACAATTGGACATATAGCTCCAGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTTGGATACGGTATCATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTCGATTTGGCTCGACTTGCTAATGACGACGATGTCATGTTACTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGTTGGAAATGCTGGTTGATCCGGATCTCCAGAAAAATTATATAGAATCTGAGGTGGAACAGTTAATTCAGGTTGCCCTGCTTTGCACACAAGGCTCTCCGATGGACCGGCCGAAAATGTCGGAAGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAGAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTTCGCCAAGAAATCGACTTATCGCCTCATCCCAGTTCGGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTTTCAGGTCCAAGATGA | 1878 | 44.3 | MELNKVWALGLVWLILVVKPLWLVFANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNHISGVIPSDLGNLTSLVSLDLYLNNFTGSIPDTLGKLSKLRFLRLNNNSLAGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPTPVSSPGGNSVTGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEIFFDVPAEEDPEVHLGQLKRFSLRELQVASDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWKTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQKNYIESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEIDLSPHPSSDWIVDSTENLHAVELSGPR | 625 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 40406051 | 40414778 | - | evm.model.ptg000002l.177 | HCH12g1482 | 556329 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1482 | 625 | Pfam | Leucine Rich Repeat | 166 | 184 | IPR001611 | GO:0005515(InterPro) | |
HCH12g1482 | 625 | FunFam | Somatic embryogenesis receptor kinase 1 | 271 | 378 | - | - | |
HCH12g1482 | 625 | SUPERFAMILY | L domain-like | 30 | 193 | - | - | |
HCH12g1482 | 625 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 379 | 596 | - | - | |
HCH12g1482 | 625 | SMART | serkin_6 | 302 | 576 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g1482 | 625 | Pfam | Leucine rich repeat N-terminal domain | 27 | 66 | IPR013210 | - | |
HCH12g1482 | 625 | ProSitePatterns | Protein kinases ATP-binding region signature. | 308 | 330 | IPR017441 | GO:0005524(InterPro) | |
HCH12g1482 | 625 | ProSiteProfiles | Protein kinase domain profile. | 302 | 589 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH12g1482 | 625 | Gene3D | Phosphorylase Kinase; domain 1 | 271 | 378 | - | - | |
HCH12g1482 | 625 | Gene3D | Ribonuclease Inhibitor | 25 | 212 | IPR032675 | - | |
HCH12g1482 | 625 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 425 | 437 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH12g1482 | 625 | Gene3D | Transferase(Phosphotransferase) domain 1 | 379 | 596 | - | - | |
HCH12g1482 | 625 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 17 | 625 | - | - | |
HCH12g1482 | 625 | SUPERFAMILY | Protein kinase-like (PK-like) | 281 | 577 | IPR011009 | - | |
HCH12g1482 | 625 | FunFam | Somatic embryogenesis receptor kinase 1 | 25 | 212 | - | - | |
HCH12g1482 | 625 | Pfam | Leucine rich repeat | 94 | 153 | IPR001611 | GO:0005515(InterPro) | |
HCH12g1482 | 625 | SMART | LRR_typ_2 | 92 | 115 | IPR003591 | - | |
HCH12g1482 | 625 | SMART | LRR_typ_2 | 116 | 140 | IPR003591 | - | |
HCH12g1482 | 625 | SMART | LRR_typ_2 | 164 | 189 | IPR003591 | - | |
HCH12g1482 | 625 | Pfam | Protein tyrosine and serine/threonine kinase | 305 | 576 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1482 | HCH-Chr12:40406051 | HCH4g0034 | HCH-Chr4:212341 | 1.20E-142 | dispersed | |
HCH11g0997 | HCH-Chr11:41508381 | HCH12g1482 | HCH-Chr12:40406051 | 2.20E-218 | transposed | |
HCH13g1275 | HCH-Chr13:40656402 | HCH12g1482 | HCH-Chr12:40406051 | 4.20E-249 | transposed | |
HCH7g0726 | HCH-Chr7:9058016 | HCH12g1482 | HCH-Chr12:40406051 | 7.60E-25 | transposed | |
HCH8g0500 | HCH-Chr8:41704090 | HCH12g1482 | HCH-Chr12:40406051 | 3.20E-31 | transposed | |
HCH8g1443 | HCH-Chr8:48959387 | HCH12g1482 | HCH-Chr12:40406051 | 2.40E-50 | transposed | |
HCH12g1482 | HCH-Chr12:40406051 | HCH13g0283 | HCH-Chr13:1887932 | 1.00E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81144 | PF00069 | Pkinase | 8.20E-45 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1482 | K13418 | - | csv:101208695 | 1118.22 |