Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1482 ATGGAGCTTAACAAGGTTTGGGCTCTTGGTTTGGTCTGGTTGATCTTGGTCGTTAAACCACTATGGCTGGTTTTTGCTAACATGGAAGGTGATGCTTTGCATAGCTTAAGAACTAGCTTGCAGGACCCTAACAATGTCTTGCAGAGTTGGGATCCCACACTTGTCAATCCCTGTACATGGTTTCATGTTACTTGCAATAATGATAATAGTGTAATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGTACACTTGTCCCACAGCTTGGCCTCCTAAAAAATTTGCAGTATTTAGAACTCTACAGCAATCACATAAGTGGGGTTATCCCTAGTGATCTTGGGAATCTGACTAGTCTGGTGAGCTTAGATCTTTATTTGAACAATTTTACAGGTTCGATTCCAGACACATTGGGCAAGCTGTCAAAATTACGGTTCCTTCGGCTTAACAACAACAGCTTAGCAGGTCCAATTCCTATGTCATTGACTAATATTTCCTCTCTTCAAGTGCTGGATCTATCAAATAACCATCTTTCAGGCGTGGTTCCAGATAATGGTTCCTTCTCCTTATTTACCCCCATCAGTTTTACTAACAACTTGGATCTTTGTGGCCCCGTTACTGGGCACCCCTGCCCTGGCTCTCCACCATTTTCTCCTCCTCCTCCTTTTGTTCCACCAACACCAGTATCTTCACCAGGTGGAAATAGTGTCACCGGGGCAATTGCTGGTGGAGTAGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAAATTTTCTTTGATGTACCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTTAGAGAATTACAAGTGGCATCAGATAGTTTTAGTAACAAAAACATACTCGGCAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGATGGTTCTTTAGTAGCCGTAAAAAGACTGAAGGAAGAGCGTACTCCAGGTGGAGAGCTGCAATTTCAAACAGAAGTGGAGATGATCAGTATGGCTGTGCATCGAAATCTCCTACGGTTACGTGGATTTTGTATGACACCGACTGAACGACTGCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCATCTTGTTTAAGAGAACGGCCACCATCCCAACCACCTCTTGATTGGAAAACGAGGAAGCGAATTGCATTGGGATCTGCAAGAGGACTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGTGATGTAAAAGCAGCAAATATTTTACTGGATGAGGAGTTTGAGGCTGTCGTCGGAGATTTTGGGTTGGCGAAGCTTATGGACTACAAGGATACTCATGTCACCACCGCCGTACGTGGTACAATTGGACATATAGCTCCAGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTTGGATACGGTATCATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTCGATTTGGCTCGACTTGCTAATGACGACGATGTCATGTTACTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGTTGGAAATGCTGGTTGATCCGGATCTCCAGAAAAATTATATAGAATCTGAGGTGGAACAGTTAATTCAGGTTGCCCTGCTTTGCACACAAGGCTCTCCGATGGACCGGCCGAAAATGTCGGAAGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAGAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTTCGCCAAGAAATCGACTTATCGCCTCATCCCAGTTCGGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTTTCAGGTCCAAGATGA 1878 44.3 MELNKVWALGLVWLILVVKPLWLVFANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNHISGVIPSDLGNLTSLVSLDLYLNNFTGSIPDTLGKLSKLRFLRLNNNSLAGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPTPVSSPGGNSVTGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEIFFDVPAEEDPEVHLGQLKRFSLRELQVASDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWKTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQKNYIESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEIDLSPHPSSDWIVDSTENLHAVELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40406051 40414778 - evm.model.ptg000002l.177 HCH12g1482 556329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1482 625 Pfam Leucine Rich Repeat 166 184 IPR001611 GO:0005515(InterPro)
HCH12g1482 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
HCH12g1482 625 SUPERFAMILY L domain-like 30 193 - -
HCH12g1482 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 596 - -
HCH12g1482 625 SMART serkin_6 302 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1482 625 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
HCH12g1482 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
HCH12g1482 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1482 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
HCH12g1482 625 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
HCH12g1482 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1482 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
HCH12g1482 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 625 - -
HCH12g1482 625 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
HCH12g1482 625 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
HCH12g1482 625 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515(InterPro)
HCH12g1482 625 SMART LRR_typ_2 92 115 IPR003591 -
HCH12g1482 625 SMART LRR_typ_2 116 140 IPR003591 -
HCH12g1482 625 SMART LRR_typ_2 164 189 IPR003591 -
HCH12g1482 625 Pfam Protein tyrosine and serine/threonine kinase 305 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1482 HCH-Chr12:40406051 HCH4g0034 HCH-Chr4:212341 1.20E-142 dispersed
HCH11g0997 HCH-Chr11:41508381 HCH12g1482 HCH-Chr12:40406051 2.20E-218 transposed
HCH13g1275 HCH-Chr13:40656402 HCH12g1482 HCH-Chr12:40406051 4.20E-249 transposed
HCH7g0726 HCH-Chr7:9058016 HCH12g1482 HCH-Chr12:40406051 7.60E-25 transposed
HCH8g0500 HCH-Chr8:41704090 HCH12g1482 HCH-Chr12:40406051 3.20E-31 transposed
HCH8g1443 HCH-Chr8:48959387 HCH12g1482 HCH-Chr12:40406051 2.40E-50 transposed
HCH12g1482 HCH-Chr12:40406051 HCH13g0283 HCH-Chr13:1887932 1.00E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81144 PF00069 Pkinase 8.20E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1482 K13418 - csv:101208695 1118.22