Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1497 ATGGGTTGTGCTCAAGCCAAACCTTCTGTTACTTCTCCTGCTGGGGGAGTAGAGAATTTGAAATCGGAAAATGGGTATGTTGGGATTTCTGATTTTAAGACTCACCGGCGATCCACGGGGCAGAGATATGTTAAGAAGGACTCTGCCGGTGGCGGTGGAAAGAACGACGGTGGCGGTGGCGGTGGTCGAATTGCTTCACAGAAGACTTCATTGTCCAAGAGTGTAGGAGATGATGAGTTGGTTGATGGATGGCCTAAATGGCTTACTAGTAATATTCCTAAACATGTTTTGGCTGGATTGGTTCCTAAGAGTGTTGAGGCCTATGATAAGCTTGATAAGGTAGGCCAAGGAAGTTACAGCAATGTGTACAAGGCTCGAGAAAGGGAGACTGGGAAAATCGTTGCACTGAAGAAAGTCCGTTTTGATACATCAGAACCTGAGAGTGTGAAGTTCATGGCCCGAGAAATTATGATATTACTGAAATTGGATCATCCCAACATTGTCAAACTTGAAGGATTGGCCACTTCACGAATGCAGTTCAGTCTTTATCTCGTCTTTGAGTTCATGCAGACTGATTTGGCCAGAGTTATTTCACGTCCGGGAACACGGCTTACTGAGCCTCAGGTCAAGTGTTATATGCATCAACTACTCTCTGGTTTGCGGCACTGTCATGATAAAGGAATATTACACCGAGATATCAAAGGCTCCAACCTGTTGATAGACAAAGATGGGATGCTAAAGATTGGCGATTTTGGGCTTGCTAATTTCTTTAGTCCAGGCTCAAAACACCACCTTACAAACCGTGTTGTGACACTTTGGTACAGAGCTCCAGAGCTATTGTTGGGTGCTACGGATTATGGAGTTAGCATCGATCTATGGAGTGCTGGATGCCTCTTGGCAGAAATGTTCACTGGAAAGCCAATTCTACCCGGTCGAACAGAGGTTGAGCAACTTCACAAAATTTTCAAGTTATGTGGTACCCCATCAGAAGACTATTGGAAAAAACTGAAGCTTTTACCAACGTTCAAGCCTCCACATTCATACAGACCTAGTCTTGTGGAATCATTTAAGCATTTACCTTCATCTTCTTTAGGCCTGCTTACCACTCTACTTGCATTAGATCCTGCATATCGTGGCTCTGCATCTTTAGCCCTCGACAATGAATTCTTTTACACAAGTCCTCTGGCATGCGACCTTTCCGGCCTTCCTGTAATTTATATCAAGGATGATGAACTAAATCAAGCGAATCAACAAAAGAAGTCTCGGAATTCGAAAGTGACAAGGCGCTCTCAAACACACCGTGAGCATAGGAGGAAAGATTTAACAGCTGAAAAACCAAAAGTTTCAACTTTTCCCAAAGAGTTGCTGCATAAAGCTTCTAGTGCTAATGACTTAAGGGAAGAGCCAGGAAGTACTACAACAAGTACCTCCTCAGGTGTGAACACAGGAGGGCAAAAGGGGAGCCCCCACTTCTTGCTATCTCCAATTGCATCTTCTAATAAGAAATCCTCAAGAATTCTAGGCCGTTTTGGATCTACCCAGAACCTCAACAACTTGCCTCCACTGCCCAAGTCCAGAAGGTACTCGACTTTCTACGACAAAGACGATGGCGTGCACGTCAATAGCAACAATGTTCGGAGGTCTGTCTCGACCAGAGATTTCAGGAATTTAGATGGAAAGGAGCCATTGAAATTCTATGCTGTTGATGCTTAG 1713 44.31 MGCAQAKPSVTSPAGGVENLKSENGYVGISDFKTHRRSTGQRYVKKDSAGGGGKNDGGGGGGRIASQKTSLSKSVGDDELVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARERETGKIVALKKVRFDTSEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFEFMQTDLARVISRPGTRLTEPQVKCYMHQLLSGLRHCHDKGILHRDIKGSNLLIDKDGMLKIGDFGLANFFSPGSKHHLTNRVVTLWYRAPELLLGATDYGVSIDLWSAGCLLAEMFTGKPILPGRTEVEQLHKIFKLCGTPSEDYWKKLKLLPTFKPPHSYRPSLVESFKHLPSSSLGLLTTLLALDPAYRGSASLALDNEFFYTSPLACDLSGLPVIYIKDDELNQANQQKKSRNSKVTRRSQTHREHRRKDLTAEKPKVSTFPKELLHKASSANDLREEPGSTTTSTSSGVNTGGQKGSPHFLLSPIASSNKKSSRILGRFGSTQNLNNLPPLPKSRRYSTFYDKDDGVHVNSNNVRRSVSTRDFRNLDGKEPLKFYAVDA 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40968015 40971690 + evm.model.ptg000002l.162 HCH12g1497 556344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1497 570 ProSiteProfiles Protein kinase domain profile. 108 390 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1497 570 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524(InterPro)
HCH12g1497 570 MobiDBLite consensus disorder prediction 415 495 - -
HCH12g1497 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1497 570 Gene3D Transferase(Phosphotransferase) domain 1 191 444 - -
HCH12g1497 570 MobiDBLite consensus disorder prediction 436 452 - -
HCH12g1497 570 SUPERFAMILY Protein kinase-like (PK-like) 103 394 IPR011009 -
HCH12g1497 570 SMART serkin_6 108 390 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1497 570 PANTHER CELL DIVISION PROTEIN KINASE 108 390 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH12g1497 570 Pfam Protein kinase domain 108 390 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1497 570 Gene3D Phosphorylase Kinase; domain 1 98 190 - -
HCH12g1497 570 MobiDBLite consensus disorder prediction 465 495 - -
HCH12g1497 570 FunFam Putative serine/threonine-protein kinase 191 428 - -
HCH12g1497 570 MobiDBLite consensus disorder prediction 1 71 - -
HCH12g1497 570 FunFam probable serine/threonine-protein kinase At1g54610 95 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0472 HCH-Chr10:3860347 HCH12g1497 HCH-Chr12:40968015 4.00E-37 dispersed
HCH12g1497 HCH-Chr12:40968015 HCH14g0179 HCH-Chr14:27401142 2.40E-150 dispersed
HCH12g1497 HCH-Chr12:40968015 HCH6g0679 HCH-Chr6:39966838 3.40E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81145 PF00069 Pkinase 2.50E-69 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1497 K08819 - csv:101209601 783.867