Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1506 ATGGAAACTAATGGCAGACTCATTGCTGGTTCTCATAACAGAAATGAATTTGTTCTTATCAATGCTGATGAGGTTGCAAGAGTAACTTCTGTGAAAGAGTTGAGTGGTCAAATATGCCAGATCTGTGGGGATGAACTAGAATTAACAGTTGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCTTTTCCAGTTTGTAGACCTTGCTATGAGTATGAAAGAAGAGAAGGCAATCAAGCTTGTCCTCAATGCAAAACTAGATACAAACGTATCAAAGGCAGTCCTCGGGTTGAAGGTGATGATGAAGAAGATGATATTGATGATCTTGAGAATGAGTTTGACATTGCAAATAAAGATCCTAACAGCATATCTGAGGCAATGCTCTATCCTCATCTTGCTTTCGGTCGTGGTTCACATGTCAACGGTTCTGGAAATATGTCTTCTGAGCTTGACTCCTCTTCTGTCCCAACTGATATTCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCCCCTTTCATAAGCCGTGGGAAAAAGGTCCACCCCGTGCCGTATAATGATTCATCCATGTCCGCTAATCCCAGGCCAATGGATCCGAAAAAAGATTTAGCAGTATATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAGGAGTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGAGGTGGAAAAGGTGACGATGAGTTTGATGATACAGATTTGCCTATGATGGATGAAGGAAGGCAGCCACTGTCAAGAAAGCTGCCAATTTCTTCAAGCAAGATAAACCCATATAGAATGATAATCGTAATTCGTATTGTGATTCTTTGCCTCTTTTTCCACTATAGAATTCTTCATCCTGTCAATGAGGCATATGGATTGTGGTTAACTTCGGTAATCTGTGAAATATGGTTTGCTGCATCATGGATATTGGATCAATTCCCAAAATGGTGCCCCATTGTCCGGGAAACTTACCTTGATCGGTTATCCTTAAGATATGAAAAAGATGGCAAACCATCTGAGTTGGCTCCTATAGACATTTACGTAAGTACAGTGGATCCTCTGAAGGAGCCTCCTCTCATCACAGCAAACACGGTTCTGTCTATACTTGCTGTAGATTATCCAGTGGACAAGGTTTCATGCTATGTCTCTGATGATGGTGCTGCTATGCTTACTTTTGAAGCCCTTTCTGAAACTTCTGAGTTTGCAAGAAAATGGGTCCCTTTCGTCAAGAAATACAGCATTGAACCACGAGCCCCAGAATGGTATTTTGCTCAGAAGGTTGACTATTTGAAAGACAAAGTAGATCCGACATTTGTCAGGGAACGGCGAGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGTTAGTTGCCATGGCTCAAAAAGTTCCTGAAGATGGATGGACCATGCAGGATGGAACTCCATGGCCTGGGAACAATGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTAGGTCAAAATGGGGTTCGGGATTTGGAAGGAAATGAACTACCTCGTCTTGTGTATGTATCTCGTGAGAAGAGACCAGGATTTGACCACCATAAGAAAGCTGGTGCCATGAATGCTCTGGTGCGTGTTTCAGCAATCATTTCCAATGCTCCTTACATGTTGAACGTAGATTGTGATCATTACATCAACAACAGCAAGGCACTTCGAGAAGCAATGTGCTTCATGATGGATCCGATTTCTGGAAAAAGAATATGCTATGTGCAATTTCCACAAAGATTTGATGGGATTGATAGGAACGATAGATACTCAAATCGCAATGTTGTATTCTTTGATATCAACATGAAAGGATTAGATGGTATTCAAGGGCCAATATATGTTGGAACTGGGTGTGTTTTCAGGAGGCAGGCCCTTTATGGATATGATGCCCCTGCGAAGAAGAAAACACCAAGAAGGACCTGCAATTGTCTGCCAAAATGGTGCTGCTGCTGCTTCGGATCTAAAAAGAAGACTAAAACAAAGAAGATCAATGATAAAAAGAAATTAAAGCACAAAGATACTTCTAAGCAGATTCATGCGCTTGAGAATATTGAGGAGGGTATTGAAGGAATAGATAACGAGAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAATTTGGGCAATCACCATCGTTCATAGCTTCCACTCTTATGGAGGATGGTGGAGTGCCTGCGGGAGCATCTTCTGCATCACTGTTGAAAGAAGCCATCCATGTAATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGTAAAGAGGTAGGGTGGATTTACGGGTCCGTTACAGAAGATATTTTAACAGGTTTCAAGATGCATTGCCATGGCTGGAGATCAGTTTATTGCATTCCTAAAAGGCCTGCATTCAAGGGTTCAGCTCCTATTAATCTTTCAGATCGTCTACACCAAGTTCTTCGGTGGGCTCTTGGATCTGTTGAAATTCTGCTGAGCAGGCATTGTCCAATATGGTATGGATACGGATGCGGTTTGAAGTGGCTGGAGCGTTTTTCGTACATAAACTCTGTTGTTTATCCATTGACGTCTATTCCATTGATTGCTTATTGTACCCTACCAGCTGTCTGCCTCCTAACAGGGCAGTTTATCGTTCCTGAGCTAAGCAACTATGCCAGTATCATTTTCATTTCCCTTTTCATATCCATAGCAGCAACCGGTATCCTTGAAATGCAATGGGGAGGTGTTGGCATTCATGATTGGTGGAGAAACGAACAGTTCTGGGTTATCGGTGGTGCTTCATCCCATCTGTTTGCCCTCTTCCAGGGTCTGCTCAAGGTTTTGGCTGGTGTTAATACAAACTTCACTGTCACATCTAAAGGAGGAGATGAAGGAAACTTTGCTGAGCTCTACATATTCAAGTGGACATCTTTGTTGATCCCTCCCTTGACCTTGTTGATCATGAATATTATCGGCGTGGTTGTTGGAGTTTCAGACGCCATCAACAATGGTTACGACTCGTGGGGTCCTCTCATCGGCAAGATGTTTTTCGCATTCTGGGTGATTGTCCATCTATACCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTCCCAACCATTATCATTGTCTGGTCAATCCTTCTCTCATCTATATTATCACTTTTATGGGTCCGAATCAACCCATTCCTTGACAAGGGTGGCATCGTATTGGAAGTTTGCGGGTTGAACTGTGACGGCTAA 3276 42.55 METNGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDELELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDDEEDDIDDLENEFDIANKDPNSISEAMLYPHLAFGRGSHVNGSGNMSSELDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPYNDSSMSANPRPMDPKKDLAVYGYGTVAWKERMEEWRKKQNERLQVIKHEGGGGKGDDEFDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVIRIVILCLFFHYRILHPVNEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELAPIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFVKKYSIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYMLNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRNDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKTPRRTCNCLPKWCCCCFGSKKKTKTKKINDKKKLKHKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPSFIASTLMEDGGVPAGASSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELSNYASIIFISLFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDEGNFAELYIFKWTSLLIPPLTLLIMNIIGVVVGVSDAINNGYDSWGPLIGKMFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDG 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41220027 41225722 - evm.model.ptg000002l.153 HCH12g1506 556353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1506 1091 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 509 655 IPR029044 -
HCH12g1506 1091 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
HCH12g1506 1091 Pfam Cellulose synthase 363 1078 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
HCH12g1506 1091 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
HCH12g1506 1091 FunFam Cellulose synthase 21 112 - -
HCH12g1506 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
HCH12g1506 1091 SUPERFAMILY Nucleotide-diphospho-sugar transferases 377 880 IPR029044 -
HCH12g1506 1091 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 283 1059 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
HCH12g1506 1091 CDD mRING-HC-C4C4_CesA 37 87 - -
HCH12g1506 1091 SUPERFAMILY RING/U-box 28 107 - -
HCH12g1506 1091 Coils Coil 99 119 - -
HCH12g1506 1091 FunFam Cellulose synthase 480 654 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1506 HCH-Chr12:41220027 HCH14g0166 HCH-Chr14:26557727 0.00E+00 dispersed
HCH12g1506 HCH-Chr12:41220027 HCH2g0720 HCH-Chr2:50892902 2.70E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1506 K10999 - csv:101214061 2107.41