Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1519 | ATGGACGGGCCCCCTGTGGCAGATTTCTGTTCGATTTGCCATGGAAATTTCAATATCCCTTGCCAAGCTAATTGCTCTCACTGGTTCTGCGGGAGTTGTATAATGCTTGTCTGGGATCATGGATCACCACTCCAAGCATGTAAATGCCCCCTGTGTCGTCGAAAGATTACTTTGTTGGTTCCTTCTGAGGCTTCAGCAAGGCAGGAAAATAACCCTGAGGTTGCTCGCATTCTGAGTAATGTAAGAATTTATAATCGTCGTTTTGGGGAAAGCTCGACTAGCCTAATTCAGCGAATGCAGGACCTTCCTTTTCTCATACGAAGGCTGATACGGGAACTTCAGAATCCACAGAGATCACTTCCACTTGTTATTAGAGCACGTGTATACCTTGCAATGATACTAAGTGTCGCCTACATTGTTAGCCCCATTGATATAATACCAGAAGCAATACTAGGAATTGTTGGACTGCTGGATGATCTCCTTATAGTACTCCTCTGCTTCCTTTACGTGGCTGCCATATACCGATCCGTGCTCTATTTCCGCCATGGCGGTACCTGA | 558 | 45.7 | MDGPPVADFCSICHGNFNIPCQANCSHWFCGSCIMLVWDHGSPLQACKCPLCRRKITLLVPSEASARQENNPEVARILSNVRIYNRRFGESSTSLIQRMQDLPFLIRRLIRELQNPQRSLPLVIRARVYLAMILSVAYIVSPIDIIPEAILGIVGLLDDLLIVLLCFLYVAAIYRSVLYFRHGGT | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 41420462 | 41423575 | - | evm.model.ptg000002l.140 | HCH12g1519 | 556366 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1519 | 185 | ProSitePatterns | Zinc finger RING-type signature. | 25 | 34 | IPR017907 | - | |
HCH12g1519 | 185 | ProSiteProfiles | Zinc finger RING-type profile. | 10 | 53 | IPR001841 | - | |
HCH12g1519 | 185 | SUPERFAMILY | RING/U-box | 9 | 59 | - | - | |
HCH12g1519 | 185 | PANTHER | UNCHARACTERIZED | 3 | 182 | IPR038896 | GO:0061630(InterPro) | |
HCH12g1519 | 185 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 115 | IPR013083 | - | |
HCH12g1519 | 185 | Pfam | Protein of unknown function (DUF1232) | 129 | 165 | IPR010652 | - | |
HCH12g1519 | 185 | SMART | ring_2 | 10 | 52 | IPR001841 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1519 | K15707 | - | rcu:8281372 | 274.633 |