Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1519 ATGGACGGGCCCCCTGTGGCAGATTTCTGTTCGATTTGCCATGGAAATTTCAATATCCCTTGCCAAGCTAATTGCTCTCACTGGTTCTGCGGGAGTTGTATAATGCTTGTCTGGGATCATGGATCACCACTCCAAGCATGTAAATGCCCCCTGTGTCGTCGAAAGATTACTTTGTTGGTTCCTTCTGAGGCTTCAGCAAGGCAGGAAAATAACCCTGAGGTTGCTCGCATTCTGAGTAATGTAAGAATTTATAATCGTCGTTTTGGGGAAAGCTCGACTAGCCTAATTCAGCGAATGCAGGACCTTCCTTTTCTCATACGAAGGCTGATACGGGAACTTCAGAATCCACAGAGATCACTTCCACTTGTTATTAGAGCACGTGTATACCTTGCAATGATACTAAGTGTCGCCTACATTGTTAGCCCCATTGATATAATACCAGAAGCAATACTAGGAATTGTTGGACTGCTGGATGATCTCCTTATAGTACTCCTCTGCTTCCTTTACGTGGCTGCCATATACCGATCCGTGCTCTATTTCCGCCATGGCGGTACCTGA 558 45.7 MDGPPVADFCSICHGNFNIPCQANCSHWFCGSCIMLVWDHGSPLQACKCPLCRRKITLLVPSEASARQENNPEVARILSNVRIYNRRFGESSTSLIQRMQDLPFLIRRLIRELQNPQRSLPLVIRARVYLAMILSVAYIVSPIDIIPEAILGIVGLLDDLLIVLLCFLYVAAIYRSVLYFRHGGT 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41420462 41423575 - evm.model.ptg000002l.140 HCH12g1519 556366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1519 185 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
HCH12g1519 185 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
HCH12g1519 185 SUPERFAMILY RING/U-box 9 59 - -
HCH12g1519 185 PANTHER UNCHARACTERIZED 3 182 IPR038896 GO:0061630(InterPro)
HCH12g1519 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 115 IPR013083 -
HCH12g1519 185 Pfam Protein of unknown function (DUF1232) 129 165 IPR010652 -
HCH12g1519 185 SMART ring_2 10 52 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1519 K15707 - rcu:8281372 274.633