Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1535 ATGCAGCCGACATCTGGCGGTGGAAATAGTAGCGGCGGCGGCGGCGGTGAACTGGGTCGTGGCGGTGGACTTGCTCGGTTCCGGTCAGCTCCTGCTACTTGGCTAGAAGCACTTTTAGAAGACGAAGAAGAAGACCCATTAAAGCCAAATCAGTGTTTAACTCAGCTTCTTGCTGGAAATTCAGCTTCGCTTGATTCTCCGGTGGATCAGGGGTTGTTTGATGTGGGTCCCTCAGCTGGATTTGCGAGACAAAATAGTTCTCCAGCTGAGTTTCTTGGAAGTTTGGGAATTGGGTCTGATGGATTTTACTCTGGGTTTGGTCTTTCGCCCGGTCTCGAGGTTTCGCCGACGTCGAAACGAGGGAGAGATGTTCAAGCTCAAATCTTTCCGAAAAGGGAGCCAAGTGGTCAGATTTCTGGTGGTGTTTCGAGCTTGATAGACATGGAAATGGAGAAGCTATTGGAGGATTCGGTACCGTGCCGGGTTCGGGCAAAGCGGGGCTGTGCGACACATCCTCGGAGTATTGCTGAGAGGGTTCGAAGGACTAAAATTAGTGACAGGATAAGGAAGCTTCAGGAGGTTGTCCCTAACATGGATAAGCAGACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAGAGGCAGATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTTAAAGAATAG 717 49.79 MQPTSGGGNSSGGGGGELGRGGGLARFRSAPATWLEALLEDEEEDPLKPNQCLTQLLAGNSASLDSPVDQGLFDVGPSAGFARQNSSPAEFLGSLGIGSDGFYSGFGLSPGLEVSPTSKRGRDVQAQIFPKREPSGQISGGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQRQIQELTEHQRRCKCMVKE 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41769894 41773696 + evm.model.ptg000002l.124 HCH12g1535 556382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1535 238 CDD bHLH_AtbHLH_like 173 225 IPR045239 -
HCH12g1535 238 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 50 231 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH12g1535 238 Gene3D - 169 238 IPR036638 GO:0046983(InterPro)
HCH12g1535 238 FunFam Transcription factor bHLH130 family 169 237 - -
HCH12g1535 238 Pfam Helix-loop-helix DNA-binding domain 174 219 IPR011598 GO:0046983(InterPro)
HCH12g1535 238 Coils Coil 208 228 - -
HCH12g1535 238 MobiDBLite consensus disorder prediction 1 24 - -
HCH12g1535 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 235 IPR036638 GO:0046983(InterPro)
HCH12g1535 238 SMART finulus 174 224 IPR011598 GO:0046983(InterPro)
HCH12g1535 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 218 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1535 HCH-Chr12:41769894 HCH8g0459 HCH-Chr8:40028731 5.70E-29 dispersed
HCH12g1535 HCH-Chr12:41769894 HCH10g0304 HCH-Chr10:2496185 1.30E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32752 PF00010 HLH 3.40E-10 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1535 - - - 0.0