Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1544 ATGTCTTTTGCAGCACCTTCAACTGGGTGGCCCCATTCAGGGCCTCCTTCTGATGCTTTATACAGGGAATTATGGCATGCCTGTGCAGGACCACTTGTCACCCTTCCTCGCCTAGACGAGCGAGTGTACTACTTTCCACAGGGTCACATGGAACAGCTTAAAGCGTCAATGCATCAAGGATCAGAGCAACAGATGCCATCGTTCAATCTACCGTCAAAAATACTTTGTAAAGTTGTCCATGTTCATCTTCGGGCGGAACCTGACACCGATGAAGTTTACGCTCAGATAACTCTGCTACCTGAAAGCAATCAAAGTGAAGTAACAAGCCCAGATCCCGTCCTTCCTGAGCCTACTAGATGCAATGTTCACTCGTTTTGCAAGATGCTTACGGCTTCTGACACTATTACTCATGGTGGCTTTTCTGTTCTTCGGAGGCATGCAGATGACTGTTTGCCACCGCTGGACATGTCTCAGCAGCCACCGTGGCAAGAGTTGGTGGCAACTGATTTGCATGGAAATCAGTGGCATTTTAGGCACATTTTCCGAGGCCAACCAAGGCGGCATGTACAAACAACTGGGTGGAGTGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATATTTCTAAGAGGTGAAAGTGGAGAGCTTTGTGTTGGGGTGAGGAGGCTCATGAGACAGCTAAACAATATGCCATCTTCTGTTATGTCAAGTCACAGTATGCATCTTGGGGTTCTTGCTACTGCATCTCATGCTATTATAACCGGAACACTCTTTTCTGTTTTTTACAAGCCAAGAACAAGCAGGTCTACTTTTCTTGTTAGTTTAAACAAGCACCTTGAAGCTCAAAACCATAAGCTTTCTGTTGGGATGAGGTTCAAGATGAGATTTGAGGGCGAGGAAGTGCCTGAAAGAAGTTTCAGTGGCACAATTGTTGGTGTTGGAGATAATTTGTCACCTAGATGGACTAATTCTGACTGGCGATCTTTAAAGGTGGAATGGGATGAGCCTTCATCTATCTTGCGTCCAGACAGGGTATCTCCGTGGGAACTGGAGCCACTTGTGGCATCTAATTCTCTAAGCTCTCAGCCTGTGCAGAGGAACAAGTGTCCGAGGCCAACTGTTTTACCTGCACCTTTGCCTGATGCAGCTGTACTTGGTGGGTGGAAATCTACGGTAGAATCTGCTGCTTTTTCATATACTGAGCCACAGCGTGGAAGGGATCTATATTCATCGCCGAAGTTTAGTACTGCTGCTACTTCAAATTCAATTGGTTTTAATGGAAATGGCTCTCTTGGTGCTGTGTCCAGCAATTGTACCTATTGGTCCAATACCAATAGAGTGGAAAATGTTACGGATACCTCTTCACATGCAGCTAACAGAGAGCCCATTGAAAAGAAACAGGCCACTAGGAATGGCTGCATGCTCTTTGGAATCCAGCTTCTAGGAAATTCCAATTTAGAGGAAGCTTTACCAGTTTCAACGCCCAAAATAGTGGGTGAGGATAGACTGATTCCACCTGTAGATACTGAATTTGATCAGCATTCTGAACCATCAAATGTTCATCGATCTAATATTCCTTCAGTAAGCTGTGATGCTGAGAAATCATGCCTGATTTCTCCTCTAGAGTCTCAAAGCAGGCAAATCCGCAGCTGCACAAAGGTTCATATGCAAGGGATTGCTGTTGGGAGGGCTGTAGATTTGACCGATTCAATCAATATGATGATTTACTTAAGAAACTGGAGGAGATGTTTGACATTGAGAGTAAGCTTTGTGGCTCTGTCAAGAAATGGCAGGTTGTTTACACGGACGATGAGGATGATATGA 1833 44.9 MSFAAPSTGWPHSGPPSDALYRELWHACAGPLVTLPRLDERVYYFPQGHMEQLKASMHQGSEQQMPSFNLPSKILCKVVHVHLRAEPDTDEVYAQITLLPESNQSEVTSPDPVLPEPTRCNVHSFCKMLTASDTITHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHVQTTGWSVFVSSKKLVAGDAFIFLRGESGELCVGVRRLMRQLNNMPSSVMSSHSMHLGVLATASHAIITGTLFSVFYKPRTSRSTFLVSLNKHLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGVGDNLSPRWTNSDWRSLKVEWDEPSSILRPDRVSPWELEPLVASNSLSSQPVQRNKCPRPTVLPAPLPDAAVLGGWKSTVESAAFSYTEPQRGRDLYSSPKFSTAATSNSIGFNGNGSLGAVSSNCTYWSNTNRVENVTDTSSHAANREPIEKKQATRNGCMLFGIQLLGNSNLEEALPVSTPKIVGEDRLIPPVDTEFDQHSEPSNVHRSNIPSVSCDAEKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTDSINMMIYLRNWRRCLTLRVSFVALSRNGRLFTRTMRMI 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41949012 41957795 + evm.model.ptg000002l.115 HCH12g1544 556391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1544 610 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
HCH12g1544 610 Gene3D - 288 362 - -
HCH12g1544 610 FunFam Auxin response factor 123 227 - -
HCH12g1544 610 Pfam B3 DNA binding domain 125 225 IPR003340 GO:0003677(InterPro)
HCH12g1544 610 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
HCH12g1544 610 FunFam Auxin response factor 288 360 - -
HCH12g1544 610 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 573 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH12g1544 610 SUPERFAMILY DNA-binding pseudobarrel domain 113 254 IPR015300 -
HCH12g1544 610 Gene3D - 122 227 IPR015300 -
HCH12g1544 610 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
HCH12g1544 610 Pfam Auxin response factor 251 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1544 HCH-Chr12:41949012 HCH1g0159 HCH-Chr1:12427444 0.00E+00 dispersed
HCH12g1544 HCH-Chr12:41949012 HCH14g1100 HCH-Chr14:37927991 7.60E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32753 PF02362 B3 1.50E-18 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1544 K14486 - csv:101204612 1008.82