Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1552 ATGGGGAGAGGAAAGATTGAGATAAAAAGGATAGAAAATACAACAAATCGTCAAGTAACATTCTGTAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTCTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCTAGCCGTGGAAGACTCTATGAGTACTGCAACAACAGCATCAAGACTACTATTGACAGGTACAAGAAGGCCTGTTCTGATAGCTCAGCTACAACCTCTGTTACAGAACTAAATACTCAATATTATCAGCAAGAATCAGCAAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCTAACAGGCACTTGATGGGGGATTCATTGAGTGCTCTAACAGTCAAAGAGCTGAAGCAGTTGGAGAATAGGCTTGAAAGAGGCATCACCAGAATCAGGTCAAAGAAGCATGAGATGTTGCTAGAAGAAATTGACTACTTGCAGAAAAGGGAAATAGAGCTGGAAAATGAAAATGTGTGTATTAGAACCAAGATAGCGGAAGTTGAGAGGCTTCAACAAGCAAATATGGTATCAGGACAAGAACTCAATGCAATTCACGCATTAGCTTCTCGTAATTTCTTCAATCCTAACATGATGGAAGGTGGTGCTATTACTTACCCACATCAAGACAAGAAGATGCTTCATCTTGGGTAA 672 39.58 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYCNNSIKTTIDRYKKACSDSSATTSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLEEIDYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIHALASRNFFNPNMMEGGAITYPHQDKKMLHLG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42152654 42158506 - evm.model.ptg000002l.107 HCH12g1552 556399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1552 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH12g1552 223 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH12g1552 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH12g1552 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1552 223 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1552 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1552 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1552 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1552 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1552 223 Coils Coil 124 163 - -
HCH12g1552 223 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1552 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH12g1552 223 FunFam agamous-like MADS-box protein AGL11 13 96 - -
HCH12g1552 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1552 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0082 HCH-Chr10:741530 HCH12g1552 HCH-Chr12:42152654 1.60E-24 dispersed
HCH12g0712 HCH-Chr12:4438182 HCH12g1552 HCH-Chr12:42152654 9.80E-37 dispersed
HCH12g1552 HCH-Chr12:42152654 HCH14g1023 HCH-Chr14:37434694 4.40E-71 dispersed
HCH12g1552 HCH-Chr12:42152654 HCH12g1556 HCH-Chr12:42203688 8.60E-27 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32755 PF01486 K-box 5.50E-27 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1552 K09264 - csv:101208072 402.905