Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1554 | ATGGCTCTGGTTTTGCATGCCGGGAGCACCAACAAGAATGCTTTCAAAGCACTTATTGCTGCTGAATACAGCGGTGTTCAAGTTGAATTGGTCAAGAATTTTGAGATGGGCGTGTCAAATAAGACTCCTGAGTTCCTTGCGTTGAATCCGATTGGAAAGGTTCCAGTGTTGGAAACACCTGAAGGACCTATATTTGAAAGTAATGCCATTGCACGATATGTCACCCGCTTGAAGGCAGATAATCCTCTTTATGGATCTTCTTTGATAGAATATGCCCATATTGAGCAATGGATTGACTTTGCAACTCTTGAGATCGATGTCAATATCTTGCGCTGGTTCATCCCAAGAATTGGGTTCGCTGTGTACCTTCCTCCGGCTGAGGAGGCTGCAATTTCTGCATTGAAAAGAGCACTTGGTGCTTTAAACACACATCTTGCTTCAAACACTTACCTTGTTGGTCACTCTGTGACACTGGCTGATATCATTTTGACATGTAACTTAACTCTGGGATTCCGCCGGCTATTAACAAAGGATTTTACCTCTGAATTCCCCCATGTTGAAAGATACTACTGGACTTTGGTTAATCAGCCAAATTTCCATAAAATACTGGGTGAGGTCAAACAGACTGAATCTGTTCCGCCTGTTCAATCGGCCTCTAAACCATCACAGCAAAAACAACCTGAAAAACCTAAGGAAGTAAAGAAGGAAGTTAAGAAAGAACAAGCTAAGCCTAAAGCAGAAGAAGCTGGTACAGAGGAAGAGGCGCCTAAACCCAAGGCCAAGAATCCTCTGGATCTATTGCCTCCTAGTAAGATGATTTTGGATGAATGGAAAAGGCTATACTCAAACACAAAGAGTAACTTCCGTGAGGTTGCCATTAAAGGATTCTGGGATATGTATGATCCAGAGGGTTACTCTCTATGGTTTTGTGATTACAAGTACAATGATGAGAACACTGTGTCATTTGTAACTTTGAACAAAGTGAGTGGCTTCCTGCAACGCATGGACTTGGCACGCAAGTATGCTTTCGGAAAGATGTTGATTATAGGCTCAGAGCCACCGTTTAAGGTGAAGGGTCTGTGGCTCTTCCGTGGATCAGAGGTCCCACAGTTTGTCATTGATGAATGTTACGACATGGAATTGTATGAATGGAAGAAGGTTGACATTAGCGATGAAGCTCAGAAGGAACTCGTCAACCAGATGATTGAAGACCATGAACCTTTTGAAGGTGAGGCTTTGTTGGATGCAAAGTGTTTCAAGTGA | 1263 | 42.83 | MALVLHAGSTNKNAFKALIAAEYSGVQVELVKNFEMGVSNKTPEFLALNPIGKVPVLETPEGPIFESNAIARYVTRLKADNPLYGSSLIEYAHIEQWIDFATLEIDVNILRWFIPRIGFAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHSVTLADIILTCNLTLGFRRLLTKDFTSEFPHVERYYWTLVNQPNFHKILGEVKQTESVPPVQSASKPSQQKQPEKPKEVKKEVKKEQAKPKAEEAGTEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGSEVPQFVIDECYDMELYEWKKVDISDEAQKELVNQMIEDHEPFEGEALLDAKCFK | 420 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 42179859 | 42182638 | - | evm.model.ptg000002l.105 | HCH12g1554 | 556401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1554 | 420 | SMART | EF1G_2 | 259 | 367 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH12g1554 | 420 | CDD | GST_N_EF1Bgamma | 3 | 77 | - | - | |
HCH12g1554 | 420 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 87 | 215 | IPR010987 | - | |
HCH12g1554 | 420 | FunFam | Elongation factor 1-gamma 1 | 260 | 420 | - | - | |
HCH12g1554 | 420 | MobiDBLite | consensus disorder prediction | 210 | 264 | - | - | |
HCH12g1554 | 420 | SFLD | Glutathione Transferase (cytosolic) | 4 | 191 | IPR040079 | - | |
HCH12g1554 | 420 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 82 | IPR004045 | - | |
HCH12g1554 | 420 | FunFam | Elongation factor 1B gamma | 1 | 74 | - | - | |
HCH12g1554 | 420 | SUPERFAMILY | eEF1-gamma domain | 261 | 420 | IPR036433 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH12g1554 | 420 | SUPERFAMILY | GST C-terminal domain-like | 80 | 215 | IPR036282 | - | |
HCH12g1554 | 420 | FunFam | Elongation factor 1 gamma | 80 | 216 | - | - | |
HCH12g1554 | 420 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 1 | 420 | IPR044628 | GO:0004364(InterPro) | |
HCH12g1554 | 420 | MobiDBLite | consensus disorder prediction | 225 | 260 | - | - | |
HCH12g1554 | 420 | SUPERFAMILY | Thioredoxin-like | 2 | 85 | IPR036249 | - | |
HCH12g1554 | 420 | Gene3D | - | 80 | 217 | - | - | |
HCH12g1554 | 420 | Pfam | Glutathione S-transferase, C-terminal domain | 127 | 197 | IPR004046 | - | |
HCH12g1554 | 420 | CDD | GST_C_EF1Bgamma_like | 90 | 210 | - | - | |
HCH12g1554 | 420 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 260 | 420 | IPR036433 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH12g1554 | 420 | Gene3D | Glutaredoxin | 1 | 74 | - | - | |
HCH12g1554 | 420 | Pfam | Elongation factor 1 gamma, conserved domain | 259 | 367 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH12g1554 | 420 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 260 | 420 | IPR001662 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
HCH12g1554 | 420 | Pfam | Glutathione S-transferase, N-terminal domain | 8 | 75 | IPR004045 | - | |
HCH12g1554 | 420 | SFLD | Main (cytGST) | 4 | 191 | - | - | |
HCH12g1554 | 420 | MobiDBLite | consensus disorder prediction | 210 | 224 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0809 | HCH-Chr11:38510625 | HCH12g1554 | HCH-Chr12:42179859 | 4.80E-188 | dispersed | |
HCH12g1554 | HCH-Chr12:42179859 | HCH1g0138 | HCH-Chr1:10461383 | 2.70E-183 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1554 | K03233 | - | vvi:100246571 | 719.539 |