Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1554 ATGGCTCTGGTTTTGCATGCCGGGAGCACCAACAAGAATGCTTTCAAAGCACTTATTGCTGCTGAATACAGCGGTGTTCAAGTTGAATTGGTCAAGAATTTTGAGATGGGCGTGTCAAATAAGACTCCTGAGTTCCTTGCGTTGAATCCGATTGGAAAGGTTCCAGTGTTGGAAACACCTGAAGGACCTATATTTGAAAGTAATGCCATTGCACGATATGTCACCCGCTTGAAGGCAGATAATCCTCTTTATGGATCTTCTTTGATAGAATATGCCCATATTGAGCAATGGATTGACTTTGCAACTCTTGAGATCGATGTCAATATCTTGCGCTGGTTCATCCCAAGAATTGGGTTCGCTGTGTACCTTCCTCCGGCTGAGGAGGCTGCAATTTCTGCATTGAAAAGAGCACTTGGTGCTTTAAACACACATCTTGCTTCAAACACTTACCTTGTTGGTCACTCTGTGACACTGGCTGATATCATTTTGACATGTAACTTAACTCTGGGATTCCGCCGGCTATTAACAAAGGATTTTACCTCTGAATTCCCCCATGTTGAAAGATACTACTGGACTTTGGTTAATCAGCCAAATTTCCATAAAATACTGGGTGAGGTCAAACAGACTGAATCTGTTCCGCCTGTTCAATCGGCCTCTAAACCATCACAGCAAAAACAACCTGAAAAACCTAAGGAAGTAAAGAAGGAAGTTAAGAAAGAACAAGCTAAGCCTAAAGCAGAAGAAGCTGGTACAGAGGAAGAGGCGCCTAAACCCAAGGCCAAGAATCCTCTGGATCTATTGCCTCCTAGTAAGATGATTTTGGATGAATGGAAAAGGCTATACTCAAACACAAAGAGTAACTTCCGTGAGGTTGCCATTAAAGGATTCTGGGATATGTATGATCCAGAGGGTTACTCTCTATGGTTTTGTGATTACAAGTACAATGATGAGAACACTGTGTCATTTGTAACTTTGAACAAAGTGAGTGGCTTCCTGCAACGCATGGACTTGGCACGCAAGTATGCTTTCGGAAAGATGTTGATTATAGGCTCAGAGCCACCGTTTAAGGTGAAGGGTCTGTGGCTCTTCCGTGGATCAGAGGTCCCACAGTTTGTCATTGATGAATGTTACGACATGGAATTGTATGAATGGAAGAAGGTTGACATTAGCGATGAAGCTCAGAAGGAACTCGTCAACCAGATGATTGAAGACCATGAACCTTTTGAAGGTGAGGCTTTGTTGGATGCAAAGTGTTTCAAGTGA 1263 42.83 MALVLHAGSTNKNAFKALIAAEYSGVQVELVKNFEMGVSNKTPEFLALNPIGKVPVLETPEGPIFESNAIARYVTRLKADNPLYGSSLIEYAHIEQWIDFATLEIDVNILRWFIPRIGFAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHSVTLADIILTCNLTLGFRRLLTKDFTSEFPHVERYYWTLVNQPNFHKILGEVKQTESVPPVQSASKPSQQKQPEKPKEVKKEVKKEQAKPKAEEAGTEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGSEVPQFVIDECYDMELYEWKKVDISDEAQKELVNQMIEDHEPFEGEALLDAKCFK 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42179859 42182638 - evm.model.ptg000002l.105 HCH12g1554 556401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1554 420 SMART EF1G_2 259 367 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH12g1554 420 CDD GST_N_EF1Bgamma 3 77 - -
HCH12g1554 420 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
HCH12g1554 420 FunFam Elongation factor 1-gamma 1 260 420 - -
HCH12g1554 420 MobiDBLite consensus disorder prediction 210 264 - -
HCH12g1554 420 SFLD Glutathione Transferase (cytosolic) 4 191 IPR040079 -
HCH12g1554 420 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
HCH12g1554 420 FunFam Elongation factor 1B gamma 1 74 - -
HCH12g1554 420 SUPERFAMILY eEF1-gamma domain 261 420 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH12g1554 420 SUPERFAMILY GST C-terminal domain-like 80 215 IPR036282 -
HCH12g1554 420 FunFam Elongation factor 1 gamma 80 216 - -
HCH12g1554 420 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 420 IPR044628 GO:0004364(InterPro)
HCH12g1554 420 MobiDBLite consensus disorder prediction 225 260 - -
HCH12g1554 420 SUPERFAMILY Thioredoxin-like 2 85 IPR036249 -
HCH12g1554 420 Gene3D - 80 217 - -
HCH12g1554 420 Pfam Glutathione S-transferase, C-terminal domain 127 197 IPR004046 -
HCH12g1554 420 CDD GST_C_EF1Bgamma_like 90 210 - -
HCH12g1554 420 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 260 420 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH12g1554 420 Gene3D Glutaredoxin 1 74 - -
HCH12g1554 420 Pfam Elongation factor 1 gamma, conserved domain 259 367 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH12g1554 420 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 260 420 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
HCH12g1554 420 Pfam Glutathione S-transferase, N-terminal domain 8 75 IPR004045 -
HCH12g1554 420 SFLD Main (cytGST) 4 191 - -
HCH12g1554 420 MobiDBLite consensus disorder prediction 210 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0809 HCH-Chr11:38510625 HCH12g1554 HCH-Chr12:42179859 4.80E-188 dispersed
HCH12g1554 HCH-Chr12:42179859 HCH1g0138 HCH-Chr1:10461383 2.70E-183 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1554 K03233 - vvi:100246571 719.539