Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1556 ATGGCTCGTGGAAAAGTTCAGATGAAGAAGATTGAAAACCCTGTTCACAGACAGGTTACCTTCTGCAAGCGCCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTGTCTGTGTTGTGCGATGCTGAAATTGGAGTTCTCATTTTCTCCGCTCATGGAAAGCTCTTTGAACTAGCTACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACAAGAGATATGATAATCCCACCCAGCTTTCAGACTCACCCATTGAAAGACAAACTCTGGAAGCAAAGGAGGAGGTTAAGAGGCTGAAAAATGAAATTGAAGTCCAAAAATGTCTCAGGCATCCATTTGGAGGGGGAACCGAGGCAATGACATTGGATGAACTTGACATGTTTGAGAAGCAACTTGAGATTTGGATTTGTCACATCCGTTCCACAAAGATGAAGTTCATGTATCAAGAGATTCAAGCATTGAGGAATCAGGAAGGAATATTGAAAGCTGCTAATAAGCATCTTCAAGATAAGATGGTGGAAAACATGGAATACACTAACATTGAAGCTGTGAATTATACTAACATTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA 612 40.85 MARGKVQMKKIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVLIFSAHGKLFELATKGTMQGLIERYKRYDNPTQLSDSPIERQTLEAKEEVKRLKNEIEVQKCLRHPFGGGTEAMTLDELDMFEKQLEIWICHIRSTKMKFMYQEIQALRNQEGILKAANKHLQDKMVENMEYTNIEAVNYTNIQYPLTIQDELFQLCT 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42203688 42219448 + evm.model.ptg000002l.103 HCH12g1556 556403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1556 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 ProSiteProfiles K-box domain profile. 88 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH12g1556 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH12g1556 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 Gene3D - 15 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH12g1556 203 Coils Coil 88 108 - -
HCH12g1556 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH12g1556 203 Pfam K-box region 87 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1556 HCH-Chr12:42203688 HCH4g0161 HCH-Chr4:923498 7.30E-33 dispersed
HCH12g1552 HCH-Chr12:42152654 HCH12g1556 HCH-Chr12:42203688 8.60E-27 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32756 PF01486 K-box 1.70E-18 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1556 - - - 0.0