Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1568 ATGGGCTGCATTTGCTCAAGAGAATCCTCCGAACCAGAGGATACCGATACGGGTCGTAAAGAGCCGGAGAAAGATTTTAGCAAATCTTCAGTGCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATTTATTATTAGAGATTCAAATGACAAGGCAAGCTTCCCTTGCAAATGGGGGTTCTCTTCATAAACCAAAGTCCAATGGAGGGTCTATCCGACACGCAAAGGATGATGGAGAGAATAAATTGATCAAGGTCGAAAGAACGAGCAATGATCATCATCATTCGAAAAGGGGTAAGACGGATACATCAGCTGGTGGAAAAAAACCAGAGTTTTATAGGTTAGCTAGTTTGCCAAAAAGTGCTGAAGCTGAACAAGTCATGGCTGGATGGCCATCATGGTTAGCATCAGTTGCCGGAGAAGCGATCAAAGGGTGGGTGCCTCGACGGGCAGACTCCTTTGAGAAGTTAAACAAAATCGGACAAGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAGATTGTGGCATTAAAAAAAGTGAGATTTGTGAATATGGATCCAGAAAGTGTCCGTTTTATGGCCAGGGAAATATATATTTTGCGTAAACTCGATCATCCGAACATTATGAAGCTTGAGGGTTTGGTCACTGCGAGAATGTCAGGCAGCTTGTACCTTATTTTTGAGTACATGGAGCATGACTTAGCAGGGCTTTCAGCAGCTCCTGGAAATAAGTTTACTGAGGCTCAGATTAAATGTTATGTGCAACAATTGATGCATGGACTTGAACATTGTCATAGTCGGGGTGTTCTGCACCGAGATATCAAAGGTTCAAATCTTCTTGTTGACAGTAATGGAGTGCTCAAGATCGGAGACTTCGGTCTCGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACGAGTCGTGTAGTGACTTTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACTGAATATGGACCAGCCATAGATCTTTGGAGCTGTGGCTGTATAGTTGCTGAACTATTTGCCGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAGATGCACAAGATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCAGAAAACAAAATTGCCACATGCAACCAGCTTCAAACCTCAACACCCGTATAAACGCTGCCTGAACGAGACGTTTAAAAGTTTCCCTTCTTCATCTCTAGCTCTCATTAATAAACTACTCGCAATTGAACCAGAACGCCGGGGATCTGCCGCTTCAGCTCTCAGAAGTGAGTTTTTCAGAACAGAACCCCTTCCATGTGACCCTTCAAGCTTACCGAAATATCCTCCGAGCAAGGAATTTGATGCCAAGCTTCGGAATGAAGAAGAAAGAAGGAGAAAGGCTGAAACTGTAAAGGGACGTCACCCCGAATCAGTAAGAAGGGGCTCAAGAGAGACCAACAAGGCAGTTCCAACTCCAGAATTCAATGCTCAAGGAGATGTCACAGTAAAGGGAAACCCTAACCCTAACCCGAAAACGTCGAGTCATAAGTTCAATCCTCAAGGGGATAGTGAGTCTTCCAGAGGAGGTGTGCAGAATAAGTATTCCCATTCAACATCTATGGTACACCCTACTGTTGCTGGTTCATGGAATAAGCCTGCTGGGGGCTCAAGAAATGGTGCAGAGTTAAGGACACAGAAATCTCAGCTGCCTCAGACAGTAGGAGACTTGACAACCTCTTCTCTCAAGAAGGAAGACACAGCTAGCAAAGATTCTGGAATGGGTTATGCTCCAAAGAAGAATAGAATCCATTACTCTGGACCATTGATGCCTCCAGGGGGAAACATTGATGACATGCTTAAAGAACACGAGCGACAAATCCAGCAGGCGTTCCGGAAGGCGCGACTCGACAAAGCTAAAACAAACAAGAGTTATGGTGATCAACTTTGA 1965 44.83 MGCICSRESSEPEDTDTGRKEPEKDFSKSSVQLVAPSPSKREDLLLEIQMTRQASLANGGSLHKPKSNGGSIRHAKDDGENKLIKVERTSNDHHHSKRGKTDTSAGGKKPEFYRLASLPKSAEAEQVMAGWPSWLASVAGEAIKGWVPRRADSFEKLNKIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNIMKLEGLVTARMSGSLYLIFEYMEHDLAGLSAAPGNKFTEAQIKCYVQQLMHGLEHCHSRGVLHRDIKGSNLLVDSNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQKTKLPHATSFKPQHPYKRCLNETFKSFPSSSLALINKLLAIEPERRGSAASALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERRRKAETVKGRHPESVRRGSRETNKAVPTPEFNAQGDVTVKGNPNPNPKTSSHKFNPQGDSESSRGGVQNKYSHSTSMVHPTVAGSWNKPAGGSRNGAELRTQKSQLPQTVGDLTTSSLKKEDTASKDSGMGYAPKKNRIHYSGPLMPPGGNIDDMLKEHERQIQQAFRKARLDKAKTNKSYGDQL 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42284330 42288057 - evm.model.ptg000002l.91 HCH12g1568 556415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1568 654 Gene3D Transferase(Phosphotransferase) domain 1 237 478 - -
HCH12g1568 654 MobiDBLite consensus disorder prediction 56 109 - -
HCH12g1568 654 MobiDBLite consensus disorder prediction 70 107 - -
HCH12g1568 654 Coils Coil 456 476 - -
HCH12g1568 654 Pfam Protein kinase domain 154 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1568 654 ProSiteProfiles Protein kinase domain profile. 154 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1568 654 MobiDBLite consensus disorder prediction 457 489 - -
HCH12g1568 654 SUPERFAMILY Protein kinase-like (PK-like) 147 446 IPR011009 -
HCH12g1568 654 PANTHER CELL DIVISION PROTEIN KINASE 153 438 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH12g1568 654 FunFam probable serine/threonine-protein kinase At1g54610 237 478 - -
HCH12g1568 654 SMART serkin_6 154 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g1568 654 MobiDBLite consensus disorder prediction 1 44 - -
HCH12g1568 654 MobiDBLite consensus disorder prediction 444 621 - -
HCH12g1568 654 Coils Coil 625 645 - -
HCH12g1568 654 Gene3D Phosphorylase Kinase; domain 1 141 236 - -
HCH12g1568 654 CDD STKc_CDK9_like 154 438 - -
HCH12g1568 654 MobiDBLite consensus disorder prediction 566 587 - -
HCH12g1568 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g1568 654 MobiDBLite consensus disorder prediction 494 551 - -
HCH12g1568 654 ProSitePatterns Protein kinases ATP-binding region signature. 160 183 IPR017441 GO:0005524(InterPro)
HCH12g1568 654 MobiDBLite consensus disorder prediction 9 27 - -
HCH12g1568 654 FunFam probable serine/threonine-protein kinase At1g54610 141 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1568 HCH-Chr12:42284330 HCH1g0137 HCH-Chr1:10363276 6.50E-200 dispersed
HCH6g0332 HCH-Chr6:5126707 HCH12g1568 HCH-Chr12:42284330 2.50E-16 dispersed
HCH12g1568 HCH-Chr12:42284330 HCH6g0679 HCH-Chr6:39966838 7.50E-188 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81147 PF00069 Pkinase 2.90E-70 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1568 K08819 - csv:101208709 1068.53