Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1571 ATGTCATTTCATTCAAGGCTTTTCTTACTAAATTTCTGTTGCAATCTGCTCATTCTCGGAGCATATTCTCGAAATGATCAACGAAAGACTTATATTGTTTATATGGGGAACCATCCAAAGGAAAAGATTCCCACTCCATCTCACCACATAGAATTGCTACAAGAAGCCATTGGAAGCACTTTTGCATCAGAATATTTACTCCATAGCTACAAGAGAAGCTTCAATGGATTCGTGGTGAAGCTCACTAAAGAAGAAGCACGAAAAGTTGCTGAAATGGATGAAGTAGTATCAGTTTTTCGTAATGGAAAGAAAGAACTTCATACCACGAGATCATGGGATTTCATGGGTTTCTCTGAACAAGTAAATCGAGTCCCATCTGTCGAAAGCAACATCATCGTCGGAGTATTTGACTCCGGTATTTGGCCGGAAAATCCAAGCTTCGACGATCAAGGGTATGGTCCACCACCACCCAAATGGAAGGGCAATTGTGAAACCTCATCCAATTTCTCCTGCAACAATAAAATCGTTGGTGCTCGCTCATATCGAAGCATTGGAAGATATCCAACCAAAGATATCAGAAATGCAAGGGATTCAAACGGCCATGGAACGCACACAGCATCGACAGTAGCTGGCGGGCTGGTTAGAAAAGCAAGTCTCTATGGCCTTGGCTTAGGAACTGCGAGGGGAGGGGTTCCATCTGCACGTATTGCCGTGTACAAGATATGTTGGCCTGATGGTTGCTTCGATGCCGATATGCTTGCCGCATTCGACGATGCGATTGCCGACGGTGTCGATATCATCTCTCTCTCTGTTGGAGGGAAAAAACAAGCTCAGTACTTTGAAGATGTAATTGCAATTGGAGGTTTCCATGCAATGCAAAAGGGAATTCTCACGTCTACCTCAGCTGGAAATAATGGTCCTTTTCCTTTTACACTCAGCAACTTCTCCCCATGGTCTCTCTCCGTGGCTGCTAGCACTACAGATAGGAACTTCTTTACCAGAGTTCAGCTGGGTGATGGTAAAATTTTCAAGGGAATCTCAATCAATAGCTTCGATCTAAAAGGAAAACAATTCCCATTAGTTCATGGAAGAGATATACCCAACTTTAGAGAAGGATTCAGTAGATCAATTTCCAGGCTTTGCAAGGAAAACTCAGTGGATAAGACTCGAATGATTGGAAAAATTATTCAATGTGATTCCCATTTATCTCCAAAGGAAGTAGGGTTATTAAAAGGTTCAATTGGTGTTGTAAATGTAATTCAAGACCAAAATCCAAATGCTCGTTCTTTTCCTTTGCCTGTTTCTCTAATTACCTCGAAGGATGGAGCTAACATTTCCTCTTACATGGCTTCAAATAGATTTCCAACTGCAACTATATTCAAGAGTGATGAACAGAAAAATCATTTGGCTCCTTTTGTAGCATCGTTTTCGTCCCGGGGTCCAAACCCTGTAACTCTGGACATTCTCAAACCGGATTTGACAGGTCCGGGAGTTGAAATTCTAGCAGCATGGTCACCAATTGCTTCAGTATCAGGAGCTCCAGGTGATGAAAGAGGAGTTCTTTACAATATCATATCAGGAACTTCAATGTCTTGTCCACATGTTACAGCCATTGCTGCATATGTCAAATCCTTCCACCCTACTTGGTCTCCTTCTGCCCTTAAATCAGCTCTAATGACAACAGCTAATCCTATGAGCAGTGAAGTGAACCCAGAAGCAGAATTTGCATATGGATCTGGCCATATAAATCCTTTGAGGGCCGTACATCCCGGATTGATCTATGATGCAAGTGAAATTGACTACGTAAAATTCCTTTGTGGACAAGGTTATAGCAACCAAATGCTAAAAATAATCTCTAATGGAAATACCATTTGTTCTAAAACCAATATAGACACAGTTTATGATTTAAACTATCCTTCCTTTGCTCTTGCAACATCAATACCTCATTCCATCTACCAAGTTTACAAAAGAACTGTCACCAATGTTGGTTCAAGTAGGTCCACATATAGAGCTACTATTATGTCTCCTTTGGGACTTGATATTACAGTTAGACCATCTATTCTATCATTCAACAGTATCGGAGAGAAGCGATCCTTTGAGCTTATAATTAAAGGAAGAATCGACATGATTGCGTCGGGTTCGTTGGTTTGGGATGATGGTAAGCATAAGGTGAGGAGTCCTATAGTAGTGTTTGGTTAA 2199 41.2 MSFHSRLFLLNFCCNLLILGAYSRNDQRKTYIVYMGNHPKEKIPTPSHHIELLQEAIGSTFASEYLLHSYKRSFNGFVVKLTKEEARKVAEMDEVVSVFRNGKKELHTTRSWDFMGFSEQVNRVPSVESNIIVGVFDSGIWPENPSFDDQGYGPPPPKWKGNCETSSNFSCNNKIVGARSYRSIGRYPTKDIRNARDSNGHGTHTASTVAGGLVRKASLYGLGLGTARGGVPSARIAVYKICWPDGCFDADMLAAFDDAIADGVDIISLSVGGKKQAQYFEDVIAIGGFHAMQKGILTSTSAGNNGPFPFTLSNFSPWSLSVAASTTDRNFFTRVQLGDGKIFKGISINSFDLKGKQFPLVHGRDIPNFREGFSRSISRLCKENSVDKTRMIGKIIQCDSHLSPKEVGLLKGSIGVVNVIQDQNPNARSFPLPVSLITSKDGANISSYMASNRFPTATIFKSDEQKNHLAPFVASFSSRGPNPVTLDILKPDLTGPGVEILAAWSPIASVSGAPGDERGVLYNIISGTSMSCPHVTAIAAYVKSFHPTWSPSALKSALMTTANPMSSEVNPEAEFAYGSGHINPLRAVHPGLIYDASEIDYVKFLCGQGYSNQMLKIISNGNTICSKTNIDTVYDLNYPSFALATSIPHSIYQVYKRTVTNVGSSRSTYRATIMSPLGLDITVRPSILSFNSIGEKRSFELIIKGRIDMIASGSLVWDDGKHKVRSPIVVFG 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42335896 42341533 + evm.model.ptg000002l.88 HCH12g1571 556418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1571 732 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 729 IPR045051 -
HCH12g1571 732 SUPERFAMILY Subtilisin-like 128 589 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH12g1571 732 ProSiteProfiles Serine proteases, subtilase domain profile. 111 588 - -
HCH12g1571 732 FunFam Subtilisin-like protease SBT5.3 21 107 - -
HCH12g1571 732 Pfam Subtilase family 129 580 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH12g1571 732 Gene3D Peptidase S8/S53 domain 130 601 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH12g1571 732 Gene3D - 328 466 - -
HCH12g1571 732 CDD PA_subtilisin_like 335 459 - -
HCH12g1571 732 FunFam Subtilisin-like protease SBT1.5 130 338 - -
HCH12g1571 732 Pfam Fibronectin type-III domain 635 730 IPR041469 -
HCH12g1571 732 CDD Peptidases_S8_3 104 563 IPR034197 -
HCH12g1571 732 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 107 IPR037045 -
HCH12g1571 732 Pfam Peptidase inhibitor I9 30 107 IPR010259 -
HCH12g1571 732 PRINTS Subtilisin serine protease family (S8) signature 526 542 IPR015500 -
HCH12g1571 732 PRINTS Subtilisin serine protease family (S8) signature 128 147 IPR015500 -
HCH12g1571 732 PRINTS Subtilisin serine protease family (S8) signature 197 210 IPR015500 -
HCH12g1571 732 Gene3D - 605 731 - -
HCH12g1571 732 ProSitePatterns Serine proteases, subtilase family, serine active site. 527 537 IPR023828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1571 HCH-Chr12:42335896 HCH1g0422 HCH-Chr1:52460628 3.90E-270 dispersed
HCH12g1571 HCH-Chr12:42335896 HCH11g0395 HCH-Chr11:3878362 3.10E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1571 - - - 0.0