Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1574 ATGGGAGATCCAAATTCTCTAAGCTGCCATGGCCCTGCAACTTCAAGCTATAGAGGTGTCCGCAAGAGAAAATGGGGCAAATGGGTATCCGAAATCCGCGAGCCTGGGAAGAAGTCCCGGATTTGGTTAGGAAGCTTCGAGAAGCCGGAGATGGCGGCAGCGGCTTACGATGTCGCCGCATATCACTTCCGTGGACCGGATGCTCGTTTGAACTTCCCTCACCTTGTCAACAACCTTCCATATCCACTCAGCTCAAGCTCAGAAGACATACGGCTGGCGGCGCATGAGGCCGCGTTACGGTTGAAAACATCTGCAGCGGCGGCTGAAGGTGGCAGTTCATCAAACTCCGGTGTGGCAGCTCCAATTACAGTGAGACTTTCACCAAGCCAAATTCAAGCTATCAATGAGTCTCCTTTAGATTCACCGTGGATGCAAATGTCGGAGAGTTTGTTAATGGAGGAGTATTCGAATAACGCTGCCCCCATGTTCACCGACCACGGAGAAGAAGATCAATGGGGTAACATGCAAAACGATTCACTTTGGGATCCTTAG 552 51.09 MGDPNSLSCHGPATSSYRGVRKRKWGKWVSEIREPGKKSRIWLGSFEKPEMAAAAYDVAAYHFRGPDARLNFPHLVNNLPYPLSSSSEDIRLAAHEAALRLKTSAAAAEGGSSSNSGVAAPITVRLSPSQIQAINESPLDSPWMQMSESLLMEEYSNNAAPMFTDHGEEDQWGNMQNDSLWDP 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42394555 42395106 + evm.model.ptg000002l.85 HCH12g1574 556421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1574 183 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1574 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 135 IPR051032 -
HCH12g1574 183 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1574 183 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1574 183 MobiDBLite consensus disorder prediction 162 183 - -
HCH12g1574 183 FunFam Ethylene-responsive transcription factor 2 15 74 - -
HCH12g1574 183 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1574 183 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1574 183 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1574 183 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1574 183 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1574 HCH-Chr12:42394555 HCH6g1032 HCH-Chr6:45048249 2.30E-25 dispersed
HCH12g1574 HCH-Chr12:42394555 HCH12g1580 HCH-Chr12:42505517 4.90E-52 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32757 PF00847 AP2 1.30E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1574 - - - 0.0