Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1580 ATGGAAACAAGCATTGATCTTTCTCATACTTACAGAGGAGTAAGGAAGAGAAAATGGGGTAAATGGGTTTCTGAAATCCGTGAGCCAGGAAAGAAAACAAGAATATGGCTTGGAAGCTATGAAGCTCCAGAAATGGCGGCCGCCGCTTACGATGTAGCCGCATTCCACCTTAGAGGCCGTGATGCCCGCCTTAACTTCCCTGAATTGGTTGATAGTTTCCCCCGTCCACTTACTTCAAGCCCGGAGGATATTCAGATGGCTGCACAGCAAGCTGCATTGCTCTTCAACAAGCCGCTGAGAGTAGCCGAGAATGGCAGTTGCTCCGCTAACACGGCGGCCGCACCGATAAGAGTCGGGCTTTCGCCGAGCCAAATTCAGGCCATTAATGATTCCCCCTTGGATTCTCCGACCATGTGGATGCAAATGGCTGAGGCTCTTAGTTTACAAGACTCTTTGGTTTTGCATGATCATTTTGATGACTGGGAAGAGATGCAGCATGAATCCATTTGGGATTCTTAA 519 48.55 METSIDLSHTYRGVRKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAAFHLRGRDARLNFPELVDSFPRPLTSSPEDIQMAAQQAALLFNKPLRVAENGSCSANTAAAPIRVGLSPSQIQAINDSPLDSPTMWMQMAEALSLQDSLVLHDHFDDWEEMQHESIWDS 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42505517 42506035 + evm.model.ptg000002l.79 HCH12g1580 556427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1580 172 PRINTS Ethylene responsive element binding protein signature 49 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1580 172 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1580 172 SMART rav1_2 10 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1580 172 FunFam Ethylene-responsive transcription factor 2 9 68 - -
HCH12g1580 172 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1580 172 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1580 172 SUPERFAMILY DNA-binding domain 10 68 IPR016177 GO:0003677(InterPro)
HCH12g1580 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 116 IPR051032 -
HCH12g1580 172 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g1580 172 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1580 HCH-Chr12:42505517 HCH6g1032 HCH-Chr6:45048249 3.50E-28 dispersed
HCH12g1574 HCH-Chr12:42394555 HCH12g1580 HCH-Chr12:42505517 4.90E-52 proximal
HCH12g1580 HCH-Chr12:42505517 HCH13g0020 HCH-Chr13:163739 1.90E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32758 PF00847 AP2 2.50E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1580 - - - 0.0