Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g1618 | ATGGCTTATAACCATTTGGATTCATCAAGAGGCAGCTATTCAGTTGCCTCAGGGCCTGTTTCACTCTCAAGACCTGCTCCTGAATTCAAGCTTTATCAGTTTTTTATTTTCTGTGTTCCAATCCTTTTCACTTTCATTCTCCTTTTCCTTTTCTATTGGTTTTATCTTCGTCCTCGAAGGGCGGATTGGGCTTCGATCCGAATGCGAACTTCTGTAGTTAACAACAACAACAATATCTCCACATCTCAAGTTGGCTTGAAGAAGGAATTCAGGGAGATGTTGCCCATTATTGTATACAATGAGACTTTCTTTGCTAATGATACACAATGTTCAGTATGTCTGGGGGATTACAAAAGAGAGGAGAAGCTTCAGCAGATACCAGCATGTGGGCATGTGTTTCATAAGGACTGCATAGATCATTGGCTATCCATCCACACCACTTGCCCACTCTGCCGTCTCTCTGTGCTTTCTTCTCCATCTCAACCACCCGCTGTGCAAGTTCAGGTGGTACTCGGATCATCCCGTGAAGAACAATACCGAAATCAAGCTTTTGAGCAAGTATGA | 564 | 43.09 | MAYNHLDSSRGSYSVASGPVSLSRPAPEFKLYQFFIFCVPILFTFILLFLFYWFYLRPRRADWASIRMRTSVVNNNNNISTSQVGLKKEFREMLPIIVYNETFFANDTQCSVCLGDYKREEKLQQIPACGHVFHKDCIDHWLSIHTTCPLCRLSVLSSPSQPPAVQVQVVLGSSREEQYRNQAFEQV | 187 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 43040279 | 43041499 | + | evm.model.ptg000002l.41 | HCH12g1618 | 556465 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g1618 | 187 | SMART | ring_2 | 110 | 151 | IPR001841 | - | |
HCH12g1618 | 187 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 157 | IPR013083 | - | |
HCH12g1618 | 187 | ProSiteProfiles | Zinc finger RING-type profile. | 110 | 152 | IPR001841 | - | |
HCH12g1618 | 187 | CDD | RING-H2_EL5-like | 109 | 152 | - | - | |
HCH12g1618 | 187 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 19 | 174 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
HCH12g1618 | 187 | SUPERFAMILY | RING/U-box | 93 | 163 | - | - | |
HCH12g1618 | 187 | Pfam | Ring finger domain | 109 | 152 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1618 | HCH-Chr12:43040279 | HCH9g1200 | HCH-Chr9:19287052 | 1.20E-16 | dispersed | |
HCH12g1618 | HCH-Chr12:43040279 | HCH10g0285 | HCH-Chr10:2367121 | 3.10E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g1618 | K19039 | - | csv:101219324 | 248.44 |