Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g1618 ATGGCTTATAACCATTTGGATTCATCAAGAGGCAGCTATTCAGTTGCCTCAGGGCCTGTTTCACTCTCAAGACCTGCTCCTGAATTCAAGCTTTATCAGTTTTTTATTTTCTGTGTTCCAATCCTTTTCACTTTCATTCTCCTTTTCCTTTTCTATTGGTTTTATCTTCGTCCTCGAAGGGCGGATTGGGCTTCGATCCGAATGCGAACTTCTGTAGTTAACAACAACAACAATATCTCCACATCTCAAGTTGGCTTGAAGAAGGAATTCAGGGAGATGTTGCCCATTATTGTATACAATGAGACTTTCTTTGCTAATGATACACAATGTTCAGTATGTCTGGGGGATTACAAAAGAGAGGAGAAGCTTCAGCAGATACCAGCATGTGGGCATGTGTTTCATAAGGACTGCATAGATCATTGGCTATCCATCCACACCACTTGCCCACTCTGCCGTCTCTCTGTGCTTTCTTCTCCATCTCAACCACCCGCTGTGCAAGTTCAGGTGGTACTCGGATCATCCCGTGAAGAACAATACCGAAATCAAGCTTTTGAGCAAGTATGA 564 43.09 MAYNHLDSSRGSYSVASGPVSLSRPAPEFKLYQFFIFCVPILFTFILLFLFYWFYLRPRRADWASIRMRTSVVNNNNNISTSQVGLKKEFREMLPIIVYNETFFANDTQCSVCLGDYKREEKLQQIPACGHVFHKDCIDHWLSIHTTCPLCRLSVLSSPSQPPAVQVQVVLGSSREEQYRNQAFEQV 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43040279 43041499 + evm.model.ptg000002l.41 HCH12g1618 556465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g1618 187 SMART ring_2 110 151 IPR001841 -
HCH12g1618 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 157 IPR013083 -
HCH12g1618 187 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
HCH12g1618 187 CDD RING-H2_EL5-like 109 152 - -
HCH12g1618 187 PANTHER RING-H2 FINGER PROTEIN ATL16 19 174 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
HCH12g1618 187 SUPERFAMILY RING/U-box 93 163 - -
HCH12g1618 187 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1618 HCH-Chr12:43040279 HCH9g1200 HCH-Chr9:19287052 1.20E-16 dispersed
HCH12g1618 HCH-Chr12:43040279 HCH10g0285 HCH-Chr10:2367121 3.10E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g1618 K19039 - csv:101219324 248.44